Technically, this was Ben's (awesome) idea to include everyone :)
Just to gauge the level of interest of IMP developers outside of UCSF - who wants to join besides Dina?
On Thu, Jun 14, 2018 at 9:24 AM, Daniel Saltzberg ds229@bu.edu wrote:
> I like the idea of involving the entire IMP community, however, my initial > goals for this meeting were not quite as large as Barak suggested! In that > case, let's push the meeting off until next week so that we give people > enough time to schedule and myself enough time to prepare a more focused > agenda. > > I'll suggest next *Tuesday, June 19th at 11AM Pacific Time.* The meeting > will go no longer than an hour and a half. > > For those new to this email thread, we are interested in identifying > specific areas in IMP where efficiency and functionality can be > significantly improved with a moderate amount of effort and task these > projects to individuals or small groups. Some issues we discussed at the > retreat are: > > * Scoring efficiency - Make IncrementalScoringFunction work with current > restraints (EM, EV) > * Parallelization of individual replicas > * Parallelizing propagation of moves within coarse grained representation > of rigid bodies. > * Identification of GPU-friendly computations > > The purpose of this meeting and subsequent ones will be to discuss the > root causes of these issues, discuss general strategies for solving them, > document them/improve the documentation in github issues and assign people > to work on them outside of the meeting. > > Cheers, > -Daniel > > On Tue, Jun 12, 2018 at 11:33 PM, Dina Schneidman duhovka@gmail.com > wrote: > >> agree with Barak. morning is best >> >> On Jun 12, 2018 11:52 PM, "Barak Raveh" barak.raveh@gmail.com wrote: >> >> I think it's great if we can get all IMP developers including in Europe >> and Asia on board, at least for the first meeting. IMP development could >> benefit a lot from collaboration among the various IMP labs, and this could >> also support future collaboration among IMP labs. >> >> The timezone is an issue - my recollection is that we have developers in >> Spain (+8 hours), France (+9 hours), Israel (+10 hours), possibly in >> Germany (+9 hours - Jan Kosinski at EMBL, Heidelberg may be interested). If >> I didn't forget anyone (Ben?) - a morning meeting here (say 10 or 11 am) >> could allow them to join in the European/ME evening. >> >> >> On Mon, Jun 11, 2018 at 10:36 AM, Ben Webb ben@salilab.org wrote: >> >>> On 6/8/18 4:44 PM, Daniel Saltzberg wrote: >>> >>>> We had a good discussion at the retreat about how improving the >>>> reliability and efficiency in IMP is critical for our current and future >>>> goals in structural modeling. To do this, we proposed a periodic meeting to >>>> discuss problems/inefficiencies in IMP, identify the root causes and >>>> collectively design the best ways to fix them. >>>> >>> >>> The best place for such discussion is the existing IMP developers' >>> mailing list (cc'd): >>> https://salilab.org/mailman/listinfo/imp-dev >>> >>> There are several people outside of the lab who are IMP developers and >>> so may be interested in joining these meetings. They're not on the lab >>> mailing list but are (or can be) on imp-dev. >>> >>> I suggest we have our first meeting next week...say Thursday 2PM? (or >>>> Ben, whatever day you plan to be in). We can decide on a recurring time >>>> then. >>>> >>> >>> If you want to have physical meetings as well, that's fine, although >>> Fridays are better for me. 2pm's probably not a great time if anybody from >>> Europe or Asia will be joining though. >>> >>> Ben >>> -- >>> ben@salilab.org https://salilab.org/~ben/ >>> "It is a capital mistake to theorize before one has data." >>> - Sir Arthur Conan Doyle >>> >> >> >> >> -- >> Barak >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev >> >> >> > > > -- > > > Daniel Saltzberg > Post-doctoral Scholar > University of California at San Francisco > Lab of Andrej Sali (www.salilab.org) > > T: 415.514.4258 > > *Mailing Address:* > UCSF MC 2552, > Mission Bay, Byers Hall > 1700 4th Street, Suite 503B > https://maps.google.com/?q=1700+4th+Street,+Suite+503B+San+Francisco,+CA+94158&entry=gmail&source=g > San Francisco, CA 94158 > https://maps.google.com/?q=1700+4th+Street,+Suite+503B+San+Francisco,+CA+94158&entry=gmail&source=g > -2330 > > saltzberg@salilab.org > ds229@bu.edu >