Hi Riccardo,
Unfortunately, Tuesday is the only day I can do this week and then I am moving/out of town all of next week.
I'll make sure to write up a summary of what we talked about and pass it on so you can stay up to date.
Best, -Daniel
On Sun, Jun 17, 2018 at 11:52 PM, Riccardo Pellarin < pellarin.riccardo@gmail.com> wrote:
> Dear guys, > > I’m abroad and could not read the mail. I would love to join, but cannot > on this tuesday and wed. If you can postpone, it would be nice! > > Also, I included Kai, he could be interested. > > Cheers > > Riccardo > > Sent from my iPhone > > > On Jun 14, 2018, at 6:34 PM, Ben Webb ben@salilab.org wrote: > > > > > > > > > > -------- Forwarded Message -------- > > Subject: Re: [IMP-dev] IMP Efficiency Comm > > Date: Thu, 14 Jun 2018 09:24:54 -0700 > > From: Daniel Saltzberg ds229@bu.edu > > To: Dina Schneidman duhovka@gmail.com > > CC: Barak Raveh barak.raveh@gmail.com, List for IMP development < > imp-dev@salilab.org>, Ben Webb ben@salilab.org, SaliLab Mail < > salilab@salilab.org> > > > > > > > > I like the idea of involving the entire IMP community, however, my > initial goals for this meeting were not quite as large as Barak suggested! > In that case, let's push the meeting off until next week so that we give > people enough time to schedule and myself enough time to prepare a more > focused agenda. > > > > I'll suggest next *Tuesday, June 19th at 11AM Pacific Time.* The meeting > will go no longer than an hour and a half. > > > > For those new to this email thread, we are interested in identifying > specific areas in IMP where efficiency and functionality can be > significantly improved with a moderate amount of effort and task these > projects to individuals or small groups. Some issues we discussed at the > retreat are: > > > > * Scoring efficiency - Make IncrementalScoringFunction work with current > restraints (EM, EV) > > * Parallelization of individual replicas > > * Parallelizing propagation of moves within coarse grained > representation of rigid bodies. > > * Identification of GPU-friendly computations > > > > The purpose of this meeting and subsequent ones will be to discuss the > root causes of these issues, discuss general strategies for solving them, > document them/improve the documentation in github issues and assign people > to work on them outside of the meeting. > > > > Cheers, > > -Daniel > > > > On Tue, Jun 12, 2018 at 11:33 PM, Dina Schneidman <duhovka@gmail.com > mailto:duhovka@gmail.com> wrote: > > > > agree with Barak. morning is best > > > > On Jun 12, 2018 11:52 PM, "Barak Raveh" <barak.raveh@gmail.com > > mailto:barak.raveh@gmail.com> wrote: > > > > I think it's great if we can get all IMP developers including in > > Europe and Asia on board, at least for the first meeting. IMP > > development could benefit a lot from collaboration among the > > various IMP labs, and this could also support future > > collaboration among IMP labs. > > > > The timezone is an issue - my recollection is that we have > > developers in Spain (+8 hours), France (+9 hours), Israel (+10 > > hours), possibly in Germany (+9 hours - Jan Kosinski at EMBL, > > Heidelberg may be interested). If I didn't forget anyone (Ben?) > > - a morning meeting here (say 10 or 11 am) could allow them to > > join in the European/ME evening. > > > > > > On Mon, Jun 11, 2018 at 10:36 AM, Ben Webb <ben@salilab.org > > mailto:ben@salilab.org> wrote: > > > > On 6/8/18 4:44 PM, Daniel Saltzberg wrote: > > > > We had a good discussion at the retreat about how > > improving the reliability and efficiency in IMP is > > critical for our current and future goals in structural > > modeling. To do this, we proposed a periodic meeting to > > discuss problems/inefficiencies in IMP, identify the > > root causes and collectively design the best ways to fix > > them. > > > > > > The best place for such discussion is the existing IMP > > developers' mailing list (cc'd): > > https://salilab.org/mailman/listinfo/imp-dev > > https://salilab.org/mailman/listinfo/imp-dev > > > > There are several people outside of the lab who are IMP > > developers and so may be interested in joining these > > meetings. They're not on the lab mailing list but are (or > > can be) on imp-dev. > > > > I suggest we have our first meeting next week...say > > Thursday 2PM? (or Ben, whatever day you plan to be in). > > We can decide on a recurring time then. > > > > > > If you want to have physical meetings as well, that's fine, > > although Fridays are better for me. 2pm's probably not a > > great time if anybody from Europe or Asia will be joining > > though. > > > > Ben > > -- ben@salilab.org mailto:ben@salilab.org > > https://salilab.org/~ben/ > > "It is a capital mistake to theorize before one has data." > > - Sir Arthur Conan Doyle > > > > > > > > > > -- Barak > > _______________________________________________ > > IMP-dev mailing list > > IMP-dev@salilab.org mailto:IMP-dev@salilab.org > > https://salilab.org/mailman/listinfo/imp-dev > > https://salilab.org/mailman/listinfo/imp-dev > > > > > > > > > > > > -- > > > > > > Daniel Saltzberg > > Post-doctoral Scholar > > University of California at San Francisco > > Lab of Andrej Sali (www.salilab.org http://www.salilab.org) > > > > T: 415.514.4258 > > _ > > _ > > _/Mailing Address:/_ > > UCSF MC 2552, > > Mission Bay, Byers Hall > > 1700 4th Street, Suite 503B > > San Francisco, CA 94158-2330 > > > > saltzberg@salilab.org mailto:saltzberg@salilab.org > > ds229@bu.edu mailto:ds229@bu.edu > > _______________________________________________ > > IMP-dev mailing list > > IMP-dev@salilab.org > > https://salilab.org/mailman/listinfo/imp-dev > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev >