No, something looks to be wrong with the repository and anything I try to commit is rejected without an error message.
On Dec 1, 2008, at 8:47 AM, Keren Lasker kerenl@salilab.org wrote:
> hey Dainel - > is the code checked in already? > thanks, > Keren. > > On Mon, 1 Dec 2008, Daniel Russel wrote: > >> I have some code for you, but the repository appears to be broken. >> Here is the example: >> import IMP >> import IMP.core >> # This example addes a restraint on bipartite nonbonded interactions >> # after excluding a set of bonded interactions. >> m= IMP.Model() >> # The set of particles >> lc= >> IMP.core.ListSingletonContainer(IMP.core.create_xyzr_particles(m, >> 20, 1.0)) >> ps = IMP.core.AllPairsPairContainer(lc) >> # Set up the nonbonded list >> h=IMP.core.HarmonicUpperBound(10,1) >> d=IMP.core.DistancePairScore(h) >> r= IMP.core.PairsRestraint(d, ps) >> m.add_restraint(r) >> # Set up optimizer >> o= IMP.core.ConjugateGradients() >> o.set_model(m) >> o.optimize(100) >> for i in range(0, ps.get_number_of_particle_pairs()): >> p= ps.get_particle_pair(i) >> print IMP.core.distance(IMP.core.XYZDecorator(p[0]), >> IMP.core.XYZDecorator(p[1])) >> On Dec 1, 2008, at 12:11 AM, Friedrich Foerster wrote: >> >> hi impians, >> >> for the 26s project i would like to use a maximum diameter >> restraint >> on the shape of proteins. so it'd be a restraint similar to the >> connectivity restraint: all distances in a protein are >> evaluated and >> if the largest distance is above a specified threshold, a >> harmonic >> restraint would be applied on the respective pair. >> did anybody already put something like that into imp? and if >> no, is >> anybody familiar with the core also interested in that and >> willing to >> code it? it'd take me ages and the code would be ugly ;) >> >> thanks >> >> frido >> >> -- >> >> Friedrich Foerster >> Max-Planck Institut fuer Biochemie >> Am Klopferspitz 18 >> D-82152 Martinsried >> >> Tel: +49 89 8578 2651 >> Fax: +49 89 8578 2641 >> >> foerster@biochem.mpg.de >> >> www.tomotronic.org >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev >> > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev