On Sep 21, 2011, at 6:18 AM, Keren Lasker wrote:
> thanks. > so how do you think others are running things on the cluster these days? :) > is everyone using your production version or installed things locally? I know of various combinations of using mine, using others, Charles was going to ask Josh to update some build machines or not using it at all. I like my production setup since you know there are no other libraries that are non-standard that are required. And I intent to keep things stable (most of the libraries there have version numbers in their paths).
> also, you can answer to that offline if more appropriate, but how do one link your hdf5 version with imp? is there a flag in the config file or something like that? As with all dependencies, just make sure the includepath, libpath, and perhaps, ldlibpath includes the library.
> On Sep 21, 2011, at 4:16 PM, Daniel Russel wrote: > >> I don't think hdf5 or at least appropriate versions of hdf5 is installed on the cluster as a whole. I suggest building against the version in ~drussel/production/hdf5 (you can copy that to your home dir if you want). >> >> On Sep 21, 2011, at 3:41 AM, Keren Lasker wrote: >> >>> hi: >>> running jobs on our shared cluster i am getting an error: >>> "ImportError: libhdf5.so.6: cannot open shared object file: No such file or directory" >>> things are running ok on baton2, the problem occurs on the nodes of the cluster. >>> any idea how to resolve that? >>> >>> thanks, keren. >>> _______________________________________________ >>> IMP-dev mailing list >>> IMP-dev@salilab.org >>> https://salilab.org/mailman/listinfo/imp-dev >> >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev > > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev