OK no problem! Let me know next event. Daniel, where are you heading to?
cheers!
Riccardo
Riccardo Pellarin, PhD =================== Institut Pasteur CNRS UMR 3528 25, rue du Docteur Roux 75724 Paris Cedex 15, France riccardo.pellarin@pasteur.fr +33 (0)1 44 38 93 63
On Mon, Jun 18, 2018 at 7:51 PM, Andrej Sali sali@salilab.org wrote:
> riccardo, there will be many more such meetings :) > > -- > Andrej Sali, Ph.D. > Professor, Department of Bioengineering and Therapeutic Sciences > Associate Dean for Research, School of Pharmacy > Department of Pharmaceutical Chemistry > California Institute for Quantitative Biosciences > University of California, San Francisco > UCSF MC 2552 > Byers Hall Room 503B > 1700 4th Street > San Francisco, CA 94143, USA > Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 > Administrative Assistant: Steve Ha, assistant@salilab.org, Tel +1 (415) > 514-4228, 502-8084 > Email sali@salilab.org sali@salilab.org; Web http://salilab.org > > On Jun 18, 2018, at 4:59 PM, Daniel Saltzberg ds229@bu.edu wrote: > > Hi Riccardo, > > Unfortunately, Tuesday is the only day I can do this week and then I am > moving/out of town all of next week. > > I'll make sure to write up a summary of what we talked about and pass it > on so you can stay up to date. > > Best, > -Daniel > > > > > > On Sun, Jun 17, 2018 at 11:52 PM, Riccardo Pellarin < > pellarin.riccardo@gmail.com> wrote: > >> Dear guys, >> >> I’m abroad and could not read the mail. I would love to join, but cannot >> on this tuesday and wed. If you can postpone, it would be nice! >> >> Also, I included Kai, he could be interested. >> >> Cheers >> >> Riccardo >> >> Sent from my iPhone >> >> > On Jun 14, 2018, at 6:34 PM, Ben Webb ben@salilab.org wrote: >> > >> > >> > >> > >> > -------- Forwarded Message -------- >> > Subject: Re: [IMP-dev] IMP Efficiency Comm >> > Date: Thu, 14 Jun 2018 09:24:54 -0700 >> > From: Daniel Saltzberg ds229@bu.edu >> > To: Dina Schneidman duhovka@gmail.com >> > CC: Barak Raveh barak.raveh@gmail.com, List for IMP development < >> imp-dev@salilab.org>, Ben Webb ben@salilab.org, SaliLab Mail < >> salilab@salilab.org> >> > >> > >> > >> > I like the idea of involving the entire IMP community, however, my >> initial goals for this meeting were not quite as large as Barak suggested! >> In that case, let's push the meeting off until next week so that we give >> people enough time to schedule and myself enough time to prepare a more >> focused agenda. >> > >> > I'll suggest next *Tuesday, June 19th at 11AM Pacific Time.* The >> meeting will go no longer than an hour and a half. >> > >> > For those new to this email thread, we are interested in identifying >> specific areas in IMP where efficiency and functionality can be >> significantly improved with a moderate amount of effort and task these >> projects to individuals or small groups. Some issues we discussed at the >> retreat are: >> > >> > * Scoring efficiency - Make IncrementalScoringFunction work with >> current restraints (EM, EV) >> > * Parallelization of individual replicas >> > * Parallelizing propagation of moves within coarse grained >> representation of rigid bodies. >> > * Identification of GPU-friendly computations >> > >> > The purpose of this meeting and subsequent ones will be to discuss the >> root causes of these issues, discuss general strategies for solving them, >> document them/improve the documentation in github issues and assign people >> to work on them outside of the meeting. >> > >> > Cheers, >> > -Daniel >> > >> > On Tue, Jun 12, 2018 at 11:33 PM, Dina Schneidman <duhovka@gmail.com >> mailto:duhovka@gmail.com> wrote: >> > >> > agree with Barak. morning is best >> > >> > On Jun 12, 2018 11:52 PM, "Barak Raveh" <barak.raveh@gmail.com >> > mailto:barak.raveh@gmail.com> wrote: >> > >> > I think it's great if we can get all IMP developers including in >> > Europe and Asia on board, at least for the first meeting. IMP >> > development could benefit a lot from collaboration among the >> > various IMP labs, and this could also support future >> > collaboration among IMP labs. >> > >> > The timezone is an issue - my recollection is that we have >> > developers in Spain (+8 hours), France (+9 hours), Israel (+10 >> > hours), possibly in Germany (+9 hours - Jan Kosinski at EMBL, >> > Heidelberg may be interested). If I didn't forget anyone (Ben?) >> > - a morning meeting here (say 10 or 11 am) could allow them to >> > join in the European/ME evening. >> > >> > >> > On Mon, Jun 11, 2018 at 10:36 AM, Ben Webb <ben@salilab.org >> > mailto:ben@salilab.org> wrote: >> > >> > On 6/8/18 4:44 PM, Daniel Saltzberg wrote: >> > >> > We had a good discussion at the retreat about how >> > improving the reliability and efficiency in IMP is >> > critical for our current and future goals in structural >> > modeling. To do this, we proposed a periodic meeting to >> > discuss problems/inefficiencies in IMP, identify the >> > root causes and collectively design the best ways to fix >> > them. >> > >> > >> > The best place for such discussion is the existing IMP >> > developers' mailing list (cc'd): >> > https://salilab.org/mailman/listinfo/imp-dev >> > https://salilab.org/mailman/listinfo/imp-dev >> > >> > There are several people outside of the lab who are IMP >> > developers and so may be interested in joining these >> > meetings. They're not on the lab mailing list but are (or >> > can be) on imp-dev. >> > >> > I suggest we have our first meeting next week...say >> > Thursday 2PM? (or Ben, whatever day you plan to be in). >> > We can decide on a recurring time then. >> > >> > >> > If you want to have physical meetings as well, that's fine, >> > although Fridays are better for me. 2pm's probably not a >> > great time if anybody from Europe or Asia will be joining >> > though. >> > >> > Ben >> > -- ben@salilab.org mailto:ben@salilab.org >> > https://salilab.org/~ben/ >> > "It is a capital mistake to theorize before one has data." >> > - Sir Arthur Conan Doyle >> > >> > >> > >> > >> > -- Barak >> > _______________________________________________ >> > IMP-dev mailing list >> > IMP-dev@salilab.org mailto:IMP-dev@salilab.org >> > https://salilab.org/mailman/listinfo/imp-dev >> > https://salilab.org/mailman/listinfo/imp-dev >> > >> > >> > >> > >> > >> > -- >> > >> > >> > Daniel Saltzberg >> > Post-doctoral Scholar >> > University of California at San Francisco >> > Lab of Andrej Sali (www.salilab.org http://www.salilab.org) >> > >> > T: 415.514.4258 >> > _ >> > _ >> > _/Mailing Address:/_ >> > UCSF MC 2552, >> > Mission Bay, Byers Hall >> > 1700 4th Street, Suite 503B >> > San Francisco, CA 94158-2330 >> > >> > saltzberg@salilab.org mailto:saltzberg@salilab.org >> > ds229@bu.edu mailto:ds229@bu.edu >> > _______________________________________________ >> > IMP-dev mailing list >> > IMP-dev@salilab.org >> > https://salilab.org/mailman/listinfo/imp-dev >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev >> > > > > -- > > > Daniel Saltzberg > Post-doctoral Scholar > University of California at San Francisco > Lab of Andrej Sali (www.salilab.org) > > T: 415.514.4258 > > *Mailing Address:* > UCSF MC 2552, > Mission Bay, Byers Hall > 1700 4th Street, Suite 503B > San Francisco, CA 94158-2330 > > saltzberg@salilab.org > ds229@bu.edu > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev > > > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev > >