calgary 200% ${IMP}/bin/imppy.sh ${MODINSTALLSVN}/bin/modpy.sh python modules/em/test/test_calc_cc/test_correlation.py Initializing key table with index 8974343 Initializing key table with index 90784334 Segmentation fault
should be reproducible on your machines if you compile with build="fast" and release=1
cheers
frido
On Tue, Apr 28, 2009 at 4:48 PM, Keren Lasker kerenl@salilab.org wrote: > frido - can you send the python lines you use to run the procedure ? > On Apr 28, 2009, at 7:44 AM, Friedrich Foerster wrote: > >> i recompiled the code taking out build="fast". then the unit tests >> actually work. however, imp is way too slow to do any serious calculations >> with the default-whatever-it-does. >> apparently, what is happening is that the parameter setting in >> SampledDensityMap::resample fails. when the code tries to use the unset >> pointers, the unit test fails with a segmentation fault. >> it would be great if an imp expert could look into that. >> >> thanks >> >> frido >> >> >> On Apr 28, 2009, at 4:11 PM, Ben Webb wrote: >> >>> Friedrich Foerster wrote: >>>> >>>> however, currently IMP.em/EMBED is not working anymore, at least for >>>> me. the essential unit test test_em_fit.py does not work on my >>>> machine. apparently, the parameter initialization does not work. the >>>> test crashes with a segmentation fault. >>> >>> That's odd - it works just fine here on all of our test machines. You >>> should try a fresh checkout - perhaps something got messed up in your >>> copy of IMP. If that still doesn't work, build with 'scons build=debug' >>> then run the test through gdb to figure out where it's crashing. What >>> kind of machine are you running on? >>> >>> Ben >>> -- >>> ben@salilab.org http://salilab.org/~ben/ >>> "It is a capital mistake to theorize before one has data." >>> - Sir Arthur Conan Doyle >>> _______________________________________________ >>> IMP-dev mailing list >>> IMP-dev@salilab.org >>> https://salilab.org/mailman/listinfo/imp-dev >>> >> >> -- >> >> Friedrich Foerster >> Max-Planck Institut fuer Biochemie >> Am Klopferspitz 18 >> D-82152 Martinsried >> >> Tel: +49 89 8578 2651 >> Fax: +49 89 8578 2641 >> >> foerster@biochem.mpg.de >> >> www.tomotronic.org >> >> >> >> >> >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev > >