It should be fixed in svn. There was a problem with how the python wrappers were built with build=fast.
On Tue, Apr 28, 2009 at 2:30 PM, Daniel Russel drussel@gmail.com wrote:
> I can reproduce this (well, actually I get lots of crashees with tests and > fast builds, not just this). > I'll try to figure out what is up. > > BTW the 'release' flag was replaced by build='release' > > > On Tue, Apr 28, 2009 at 12:31 PM, Friedrich Foerster < > foerster@biochem.mpg.de> wrote: > >> calgary 200% ${IMP}/bin/imppy.sh ${MODINSTALLSVN}/bin/modpy.sh python >> modules/em/test/test_calc_cc/test_correlation.py >> Initializing key table with index 8974343 >> Initializing key table with index 90784334 >> Segmentation fault >> >> should be reproducible on your machines if you compile with >> build="fast" and release=1 >> >> cheers >> >> frido >> >> On Tue, Apr 28, 2009 at 4:48 PM, Keren Lasker kerenl@salilab.org wrote: >> > frido - can you send the python lines you use to run the procedure ? >> > On Apr 28, 2009, at 7:44 AM, Friedrich Foerster wrote: >> > >> >> i recompiled the code taking out build="fast". then the unit tests >> >> actually work. however, imp is way too slow to do any serious >> calculations >> >> with the default-whatever-it-does. >> >> apparently, what is happening is that the parameter setting in >> >> SampledDensityMap::resample fails. when the code tries to use the unset >> >> pointers, the unit test fails with a segmentation fault. >> >> it would be great if an imp expert could look into that. >> >> >> >> thanks >> >> >> >> frido >> >> >> >> >> >> On Apr 28, 2009, at 4:11 PM, Ben Webb wrote: >> >> >> >>> Friedrich Foerster wrote: >> >>>> >> >>>> however, currently IMP.em/EMBED is not working anymore, at least for >> >>>> me. the essential unit test test_em_fit.py does not work on my >> >>>> machine. apparently, the parameter initialization does not work. the >> >>>> test crashes with a segmentation fault. >> >>> >> >>> That's odd - it works just fine here on all of our test machines. You >> >>> should try a fresh checkout - perhaps something got messed up in your >> >>> copy of IMP. If that still doesn't work, build with 'scons >> build=debug' >> >>> then run the test through gdb to figure out where it's crashing. What >> >>> kind of machine are you running on? >> >>> >> >>> Ben >> >>> -- >> >>> ben@salilab.org http://salilab.org/~ben/http://salilab.org/%7Eben/ >> >>> "It is a capital mistake to theorize before one has data." >> >>> - Sir Arthur Conan Doyle >> >>> _______________________________________________ >> >>> IMP-dev mailing list >> >>> IMP-dev@salilab.org >> >>> https://salilab.org/mailman/listinfo/imp-dev >> >>> >> >> >> >> -- >> >> >> >> Friedrich Foerster >> >> Max-Planck Institut fuer Biochemie >> >> Am Klopferspitz 18 >> >> D-82152 Martinsried >> >> >> >> Tel: +49 89 8578 2651 >> >> Fax: +49 89 8578 2641 >> >> >> >> foerster@biochem.mpg.de >> >> >> >> www.tomotronic.org >> >> >> >> >> >> >> >> >> >> >> >> >> >> _______________________________________________ >> >> IMP-dev mailing list >> >> IMP-dev@salilab.org >> >> https://salilab.org/mailman/listinfo/imp-dev >> > >> > _______________________________________________ >> > IMP-dev mailing list >> > IMP-dev@salilab.org >> > https://salilab.org/mailman/listinfo/imp-dev >> > >> > >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev >> > >