On Apr 25, 2011, at 2:36 PM, Ben Webb wrote:
> On 04/25/2011 02:31 PM, Daniel Russel wrote: >> - ~drussel/production/hdf5: the version of hdf5 installed on the >> cluster is old and has several important differences from more recent >> versions. Backporting the hdf5 code looks to be a bit painful and >> messy and hdf5 is very easy to build. > > Yes, it's trivial to upgrade the version installed on the cluster. You > could have simply asked. ;) I will do so. Yeah, but it was pretty trivial to build oneself and I assumed that the cluster was as up to date as was easy :-) Anyway, upgrading it is, of course, better.
> >> - ~drussel/production/bullet: the physics based optimizer, it is not >> installed in the cluster - ~drussel/production/CGAL: the geometry >> library, it is not installed in the cluster > > Both bullet and CGAL are indeed installed on the interactive nodes. You > simply need to copy the shared libraries to a suitable shared location > if you want to run bullet- or CGAL-enabled IMP on the cluster. For > example, the nightly builds already do so: see > /salilab/diva1/home/imp/nightly/lib/x86_64-intel8/ for 64-bit DSOs. They are not installed on the optint nodes, for example.