To fix the last problem, I would suggest removing all build and scons files (if you are building out or source, do "rm -rf .scon* modules build applications" if you are building in source, then just do "rm -rf .scons* build" and you are probably OK. Scons gets easily confused.
On Tue, Feb 21, 2012 at 10:27 AM, Ben Webb ben@salilab.org wrote: > On 02/21/2012 08:36 AM, Davide Baů wrote: >> >> On Feb 21, 2012, at 5:23 PM, Ben Webb wrote: >>> >>> Is there a reason this machine is years out of date? (The latest >>> update for RHEL 5 is 5.7.) It seems entirely possible that a bug in >>> one of the system headers was fixed in the interim. >> >> Actually I don't know. I will contact the informatics department to >> ask if it is possible to update the system (unfortunately we can >> just "use" the cluster.) > > > You can point them to http://en.wikipedia.org/wiki/RHEL#Version_history > 5.3 has been obsolete since 5.4 was released in September 2009. > >> I got a error on the algebra module: Errors building: >> build/src/IMP.algebra.py. It's curious that there's a red box on the >> algebra module on Mac while it compiled with no errors on my Mac. > > > It's a different Mac (32-bit code is built on a 10.4 - Tiger - machine). > Chances are your machine is more similar to our Snow Leopard 64-bit build > machine. I've added more descriptive labels to this page, which should show > up tomorrow. > > ... >> >> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:243: >> Error: Template 'GridD' undefined. >> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:244: >> Error: Template 'GridD' undefined. >> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:245: >> Error: Template 'GridD' undefined. >> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:246: >> Error: Template 'GridD' undefined. >> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:247: >> Error: Template 'GridD' undefined. >> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:248: >> Error: Template 'GridD' undefined. >> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:249: > > > Odd. The SWIG file should be parsing algebra's GridD.h header, which defines > that template. But Daniel did make some changes there recently - are you > sure you don't have a mismatch of versions somewhere (perhaps an older > version of GridD.h paired with a newer SWIG interface)? I'd suggest a fresh > checkout to be sure. > > Ben > -- > ben@salilab.org http://salilab.org/~ben/ > "It is a capital mistake to theorize before one has data." > - Sir Arthur Conan Doyle > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev