The names of some of the decorators (eg IMP.atom.MolecularHierarchyDecorator) are rather annoyingly long. For example mh= IMP.atom.MolecularHierarchyDecorator.create(p, IMP.atom.MolecularHierarchyDecorator.PROTEIN) One uniform way of shortening them would be to just drop the decorator bit. On the documentation side, it works since I had already established the shorthand of saying XYZ particle instead of XYZDecorator instance particle. Such a change would just require running a sed script on people's code, so the cost of the update would be small. Thoughts? The new names would include: XYZ XYZR Residue Atom MolecularHierarchy: still kind of long, since it is now in atom we could drop the Molecular part and just make it IMP.atom.Hierarchy, but this causes problems if you do using or import on IMP.atom and IMP.core (as I tend to do) RigidBody
Thoughts, comments?