frido - can you send the python lines you use to run the procedure ? On Apr 28, 2009, at 7:44 AM, Friedrich Foerster wrote:
> i recompiled the code taking out build="fast". then the unit tests > actually work. however, imp is way too slow to do any serious > calculations with the default-whatever-it-does. > apparently, what is happening is that the parameter setting in > SampledDensityMap::resample fails. when the code tries to use the > unset pointers, the unit test fails with a segmentation fault. > it would be great if an imp expert could look into that. > > thanks > > frido > > > On Apr 28, 2009, at 4:11 PM, Ben Webb wrote: > >> Friedrich Foerster wrote: >>> however, currently IMP.em/EMBED is not working anymore, at least for >>> me. the essential unit test test_em_fit.py does not work on my >>> machine. apparently, the parameter initialization does not work. the >>> test crashes with a segmentation fault. >> >> That's odd - it works just fine here on all of our test machines. You >> should try a fresh checkout - perhaps something got messed up in your >> copy of IMP. If that still doesn't work, build with 'scons >> build=debug' >> then run the test through gdb to figure out where it's crashing. What >> kind of machine are you running on? >> >> Ben >> -- >> ben@salilab.org http://salilab.org/~ben/ >> "It is a capital mistake to theorize before one has data." >> - Sir Arthur Conan Doyle >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev >> > > -- > > Friedrich Foerster > Max-Planck Institut fuer Biochemie > Am Klopferspitz 18 > D-82152 Martinsried > > Tel: +49 89 8578 2651 > Fax: +49 89 8578 2641 > > foerster@biochem.mpg.de > > www.tomotronic.org > > > > > > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev