Ben - actually Matrix3D is dead since we decided it should inherit from MultiArray . I am not using it for the transformation and you can remove it. On Dec 3, 2008, at 9:26 PM, Notification of IMP commits wrote:

> Author: ben@SALILAB.ORG > Date: 2008-12-03 12:26:15 -0800 (Wed, 03 Dec 2008) > New Revision: 940 > > Added: > trunk/modules/core/include/Matrix3D.h > trunk/modules/core/include/ParticleFunction.h > trunk/modules/core/include/Rotation3D.h > trunk/modules/core/include/Transformation3D.h > trunk/modules/core/include/TransformationFunction.h > trunk/modules/core/src/Matrix3D.cpp > trunk/modules/core/src/Rotation3D.cpp > trunk/modules/core/src/Transformation3D.cpp > trunk/modules/core/test/transformation/ > Removed: > trunk/modules/misc/include/Matrix3D.h > trunk/modules/misc/include/ParticleFunction.h > trunk/modules/misc/include/Rotation3D.h > trunk/modules/misc/include/Transformation3D.h > trunk/modules/misc/include/TransformationFunction.h > trunk/modules/misc/src/Matrix3D.cpp > trunk/modules/misc/src/Rotation3D.cpp > trunk/modules/misc/src/Transformation3D.cpp > trunk/modules/misc/test/transformation/ > Modified: > trunk/modules/core/include/SConscript > trunk/modules/core/src/SConscript > trunk/modules/core/test/transformation/ > test_particles_transformation.py > trunk/modules/core/test/transformation/test_rigid_transformation.py > trunk/modules/misc/include/SConscript > trunk/modules/misc/src/SConscript > Log: > Move transformation classes from misc to core, since they are of > general > utility. > > > Copied: trunk/modules/core/include/Matrix3D.h (from rev 939, trunk/ > modules/misc/include/Matrix3D.h) > =================================================================== > --- trunk/modules/core/include/Matrix3D.h > (rev 0) > +++ trunk/modules/core/include/Matrix3D.h 2008-12-03 20:26:15 UTC > (rev 940) > @@ -0,0 +1,96 @@ > +/** > + * \file Matrix3D.h \brief 3D matrix class. > + * > + * Copyright 2007-8 Sali Lab. All rights reserved. > + * > + */ > + > +#ifndef IMPCORE_MATRIX_3D_H > +#define IMPCORE_MATRIX_3D_H > + > +#include "core_exports.h" > + > +#include "IMP/Vector3D.h" > +#include <math.h> > + > +IMPCORE_BEGIN_NAMESPACE > + > +//! 3D matrix class. > +/** \ingroup helper > +*/ > +class IMPCOREEXPORT Matrix3D > +{ > +public: > + //! Default constructor. All cells of the matrix are 0 > + Matrix3D() { > + vrow[0] = vrow[1] = vrow[2] = Vector3D(0, 0, 0); > + } > + > + //! Initializes a matrix with explicit values > + Matrix3D(Float a11, Float a12, Float a13, > + Float a21, Float a22, Float a23, > + Float a31, Float a32, Float a33) { > + vrow[0] = Vector3D(a11, a12, a13); > + vrow[1] = Vector3D(a21, a22, a23); > + vrow[2] = Vector3D(a31, a32, a33); > + } > + //! Constructs a matrix with d's in the diagonal and 0's else > where. > + /** \param[in] d the value of the diagonal cells > + */ > + Matrix3D(Float d){ > + vrow[0] = Vector3D(d, 0, 0); > + vrow[1] = Vector3D(0, d, 0); > + vrow[2] = Vector3D(0, 0, d); > + } > + > + Vector3D operator*(const Vector3D &o) const { > + return Vector3D(vrow[0]*o, vrow[1]*o, vrow[2]*o); > + } > + > + //! Returns the rotation around the x-axis for a rotational > matrix assuming > + //! rotations are performed in the order of x-y-z. > + /** \note the output is meaningless if the matrix is not a > rotational matrix. > + */ > + Float rotX() const { > + return atan2(element(3,2), element(3,3)); > + } > + //! Returns the rotation around the y-axis for a rotational > matrix assuming > + //! rotations are performed in the order of x-y-z. > + /** \note the output is meaningless if the matrix is not a > rotational matrix. > + */ > + Float rotY() const { > + return atan2(element(3,1), > + > sqrt(element(2,1)*element(2,1)+element(1,1)*element(1,1))); > + } > + > + //! Returns the rotation around the z-axis for a rotational > matrix assuming > + //! rotations are performed in the order of x-y-z. > + /** \note the output is meaningless if the matrix is not a > rotational matrix. > + */ > + Float rotZ() const { > + return atan2(element(2,1), element(1,1)); > + } > + > + //! Returns 3 rotation angles assuming > + //! rotations are performed in the order of x-y-z. > + /** \note the output is meaningless if the matrix is not a > rotational matrix. > + */ > + Vector3D rot() const { > + return Vector3D(rotX(), rotY(), rotZ()); > + } > + > + void show(std::ostream& out = std::cout) const { > + out <<vrow[0]<<'\n'<<vrow[1]<<'\n'<<vrow[2]<<'\n'; > + } > + > +private: > + //! Returns the numerical value at position row, col in the 3X3 > matrix > + //! row, col should be within the range of 1..3 or run time > errors may occur. > + Float element(const unsigned short r, const unsigned short col) > const { > + return vrow[r-1][col-1]; > + } > + Vector3D vrow[3]; // 3 columns of the matrix are held in 3 > vectors > +}; > + > +IMPCORE_END_NAMESPACE > +#endif /* IMPCORE_MATRIX_3D_H */ > > > Property changes on: trunk/modules/core/include/Matrix3D.h > ___________________________________________________________________ > Added: svn:mergeinfo > + > > Copied: trunk/modules/core/include/ParticleFunction.h (from rev 939, > trunk/modules/misc/include/ParticleFunction.h) > =================================================================== > --- trunk/modules/core/include/ > ParticleFunction.h (rev 0) > +++ trunk/modules/core/include/ParticleFunction.h 2008-12-03 > 20:26:15 UTC (rev 940) > @@ -0,0 +1,32 @@ > +/** > + * \file ParticleFunction.h \brief Apply a function on a > particle > + * > + * Copyright 2007-8 Sali Lab. All rights reserved. > + * > + */ > + > +#ifndef IMPCORE_PARTICLE_FUNCTION_H > +#define IMPCORE_PARTICLE_FUNCTION_H > + > +#include "core_exports.h" > + > +#include <IMP/Particle.h> > + > +IMPCORE_BEGIN_NAMESPACE > + > +//! Virtual class for applying a function on Particles > +/** > + */ > +class ParticleFunction > +{ > +public: > + //! Initialize the particle function > + ParticleFunction(){} > + virtual ~ParticleFunction(){} > + //! Apply a function on a particle > + virtual void apply(Particles ps){} > +}; > + > +IMPCORE_END_NAMESPACE > + > +#endif /* IMPCORE_PARTICLE_FUNCTION_H */ > > > Property changes on: trunk/modules/core/include/ParticleFunction.h > ___________________________________________________________________ > Added: svn:mergeinfo > + > > Copied: trunk/modules/core/include/Rotation3D.h (from rev 939, trunk/ > modules/misc/include/Rotation3D.h) > =================================================================== > --- trunk/modules/core/include/Rotation3D.h > (rev 0) > +++ trunk/modules/core/include/Rotation3D.h 2008-12-03 20:26:15 UTC > (rev 940) > @@ -0,0 +1,107 @@ > +/** > + * \file Rotation3D.h \brief Simple 3D rotation class. > + * > + * Copyright 2007-8 Sali Lab. All rights reserved. > + * > + */ > + > +#ifndef IMPCORE_ROTATION_3D_H > +#define IMPCORE_ROTATION_3D_H > + > +#include "core_exports.h" > +#include "IMP/Vector3D.h" > +#include <iostream> > +IMPCORE_BEGIN_NAMESPACE > + > +//! 3D rotation class. > +/** Holds a three dimensional rotation compactly using a quaternion > (4 numbers). > + Advantages using quaternion: > + 1. Easy convertion between axis/angle to quaternion reprsentation > + 2. Robustness to rounding errors. > + 3. Is not subject to "Gimbal lock" (i.e. attempts to rotate an > + object fail to appear as expected, due to the order in which > the > + rotations are performed) like Euler angles. > + 4. Can be interpolated > + 5. The quaternions representation does not harm the performance > too much. > + http://www.euclideanspace.com/maths/algebra/matrix/orthogonal/rotation/index... > + > + Currently the rotation can be initialized from either: > + XYZ Euler angles > + Rotation Matrix > + Quaternion > +*/ > + > +class IMPCOREEXPORT Rotation3D { > +public: > + Rotation3D():a_(0.0),b_(0.0),c_(0.0),d_(0.0) {} > + Rotation3D(Float a, Float b, Float c, Float d){ > + a_=a;b_=b;c_=c;d_=d; > + } > + //! Rotation by vector multiplication > + Vector3D mult(const Vector3D &o) const { > + return Vector3D((a_*a_+b_*b_-c_*c_-d_*d_)*o[0] + > + 2*(b_*c_-a_*d_)*o[1] + 2*(b_*d_+a_*c_)*o[2], > + 2*(b_*c_+a_*d_)*o[0] + > + (a_*a_-b_*b_+c_*c_-d_*d_)*o[1] + 2*(c_*d_- > a_*b_)*o[2], > + 2*(b_*d_-a_*c_)*o[0] + > + 2*(c_*d_+a_*b_)*o[1] + (a_*a_-b_*b_-c_*c_ > +d_*d_)*o[2]); > + } > + void show(std::ostream& out = std::cout) const { > + out <<a_<<"|"<<b_<<"|"<<c_<<"|"<<d_<<'\n'; > + } > +private: > + Float a_,b_,c_,d_; > +}; > + > + > +//! Initialize a rotation in x-y-z order from three angles > +/** \param[in] xr Rotation around the X axis in radians > + \param[in] yr Rotation around the Y axis in radians > + \param[in] zr Rotation around the Z axis in radians > + \note The three rotations are represented in the original > (fixed) > + coordinate frame. http://en.wikipedia.org/wiki/Conversion_between_quaternions_and_Euler_angles > +*/ > +inline Rotation3D rotation_from_fixed_xyz(Float xr,Float yr, Float > zr) > +{ > + Float a,b,c,d; > + Float cx = cos(xr); Float cy = cos(yr); Float cz = cos(zr); > + Float sx = sin(xr); Float sy = sin(yr); Float sz = sin(zr); > + Float m00 = cz*cy; > + Float m11 = -sy*sx*sz + cx*cz; > + Float m22 = cy*cx; > + a = sqrt(1+m00+m11+m22)/2.0; > + b = sqrt(1+m00-m11-m22)/2.0; > + c = sqrt(1-m00+m11-m22)/2.0; > + d = sqrt(1-m00-m11+m22)/2.0; > + if (cy*sx + sy*cx*sz + sx*cz < 0.0) b = -b; > + if (sz*sx - sy*cx*cz - sy < 0.0) c = -c; > + if (sz*cy + sy*sx*cz + sz*cx < 0.0) d = -d; > + return Rotation3D(a,b,c,d); > +} > + > +inline Rotation3D rotation_from_mat(Float m11,Float m12,Float m13, > + Float m21,Float m22,Float m23, > + Float m31,Float m32,Float m33) { > + Float a,b,c,d; > + a = fabs(1+m11+m22+m33)/4; > + b = fabs(1+m11-m22-m33)/4; > + c = fabs(1-m11+m22-m33)/4; > + d = fabs(1-m11-m22+m33)/4; > + > + // make sure quat is normalized. > + Float sum = a+b+c+d; > + a = sqrt(a/sum); > + b = sqrt(b/sum); > + c = sqrt(c/sum); > + d = sqrt(d/sum); > + > + if (m32-m23 < 0.0) b=-b; > + if (m13-m31 < 0.0) c=-c; > + if (m21-m12 < 0.0) d=-d; > + return Rotation3D(a,b,c,d); > +} > +/* > +Rotation3D rotation_from_axis_angle(Vector3D axis, Float a){} > +*/ > +IMPCORE_END_NAMESPACE > +#endif /* IMPCORE_ROTATION_3D_H */ > > > Property changes on: trunk/modules/core/include/Rotation3D.h > ___________________________________________________________________ > Added: svn:mergeinfo > + > > Modified: trunk/modules/core/include/SConscript > =================================================================== > --- trunk/modules/core/include/SConscript 2008-12-03 03:57:02 UTC > (rev 939) > +++ trunk/modules/core/include/SConscript 2008-12-03 20:26:15 UTC > (rev 940) > @@ -42,6 +42,7 @@ > 'Linear.h', > 'ListPairContainer.h', > 'ListSingletonContainer.h', > + 'Matrix3D.h', > 'MaxChangeScoreState.h', > 'MaximumChangeScoreState.h', > 'MaximumPairScoreRestraint.h', > @@ -65,10 +66,12 @@ > 'PairModifier.h', > 'PairsRestraint.h', > 'PairsScoreState.h', > + 'ParticleFunction.h', > 'PropagateBondDerivativesSingletonModifier.h', > 'QuadraticClosePairsFinder.h', > 'ResidueDecorator.h', > 'RestraintSet.h', > + 'Rotation3D.h', > 'SingletonContainer.h', > 'SingletonContainerSet.h', > 'SingletonListRestraint.h', > @@ -77,6 +80,8 @@ > 'SingletonsScoreState.h', > 'SphereDistancePairScore.h', > 'SteepestDescent.h', > + 'Transformation3D.h', > + 'TransformationFunction.h', > 'TransformedDistancePairScore.h', > 'TripletChainRestraint.h', > 'TypedPairScore.h', > > Copied: trunk/modules/core/include/Transformation3D.h (from rev 939, > trunk/modules/misc/include/Transformation3D.h) > =================================================================== > --- trunk/modules/core/include/ > Transformation3D.h (rev 0) > +++ trunk/modules/core/include/Transformation3D.h 2008-12-03 > 20:26:15 UTC (rev 940) > @@ -0,0 +1,47 @@ > +/** > + * \file Transformation3D.h \brief Simple 3D transformation class. > + * > + * Copyright 2007-8 Sali Lab. All rights reserved. > + * > + */ > + > +#ifndef IMPCORE_TRANSFORMATION_3D_H > +#define IMPCORE_TRANSFORMATION_3D_H > + > +#include "core_exports.h" > + > +#include "IMP/Vector3D.h" > +#include "IMP/core/Rotation3D.h" > + > +IMPCORE_BEGIN_NAMESPACE > + > +//! Simple 3D transformation class > +/** \ingroup helper > +*/ > +class IMPCOREEXPORT Transformation3D > +{ > +public: > + // public for swig > + typedef Transformation3D This; > + Transformation3D():rot_(),trans_(){ > + } > + Transformation3D(const Rotation3D& r, const Vector3D& t) > + : rot_(r), trans_(t){} > + //! transform > + Vector3D transform(const Vector3D &o) const { > + return rot_.mult(o) + trans_; > + } > + Vector3D get_trans()const{return trans_;} > + // Matrix3D get_mat()const{return rot_;} > + void show(std::ostream& out = std::cout) const { > + rot_.show(out); > + out<<" || "<<trans_<<"\n"; > + } > +private: > + Vector3D trans_; //tranlation > + Rotation3D rot_; //rotation > +}; > + > +IMPCORE_END_NAMESPACE > + > +#endif /* IMPCORE_TRANSFORMATION_3D_H */ > > > Property changes on: trunk/modules/core/include/Transformation3D.h > ___________________________________________________________________ > Added: svn:mergeinfo > + > > Copied: trunk/modules/core/include/TransformationFunction.h (from > rev 939, trunk/modules/misc/include/TransformationFunction.h) > =================================================================== > --- trunk/modules/core/include/ > TransformationFunction.h (rev 0) > +++ trunk/modules/core/include/TransformationFunction.h 2008-12-03 > 20:26:15 UTC (rev 940) > @@ -0,0 +1,50 @@ > +/** > + * \file TransformationFunction.h > + * \brief Transforms a vector of Particles > + * > + * Copyright 2007-8 Sali Lab. All rights reserved. > + */ > + > +#ifndef IMPCORE_TRANSFORMATION_FUNCTION_H > +#define IMPCORE_TRANSFORMATION_FUNCTION_H > + > +#include "core_exports.h" > + > +#include <IMP/core/ParticleFunction.h> > +#include "IMP/core/Transformation3D.h" > +#include "IMP/core/MolecularHierarchyDecorator.h" > +#include "IMP/core/XYZDecorator.h" > +#include <iostream> > + > +IMPCORE_BEGIN_NAMESPACE > +//! This class transforms a vector of particles > +/** > + */ > +class TransformationFunction : public ParticleFunction > +{ > +public: > + TransformationFunction(Transformation3D t) > + { > + t_=t; > + } > + ~TransformationFunction() > + { > + } > + //! Apply the transformation on all of the particle-leaves of > + //! the input particle. > + void apply(Particles ps) > + { > + IMP::core::XYZDecorator xyz; > + Vector3D v; > + for(Particles::iterator it = ps.begin(); it != ps.end();it++) { > + xyz = IMP::core::XYZDecorator::cast(*it); > + v = xyz.get_coordinates(); > + xyz.set_coordinates(t_.transform(v)); > + } > + } > +private: > + Transformation3D t_; > +}; > + > +IMPCORE_END_NAMESPACE > +#endif /* IMPCORE_TRANSFORMATION_FUNCTION_H */ > > > Property changes on: trunk/modules/core/include/ > TransformationFunction.h > ___________________________________________________________________ > Added: svn:mergeinfo > + > > Copied: trunk/modules/core/src/Matrix3D.cpp (from rev 939, trunk/ > modules/misc/src/Matrix3D.cpp) > =================================================================== > --- trunk/modules/core/src/Matrix3D.cpp (rev > 0) > +++ trunk/modules/core/src/Matrix3D.cpp 2008-12-03 20:26:15 UTC (rev > 940) > @@ -0,0 +1,10 @@ > +/** > + * \file Matrix3D.cpp \brief 3D matrix class. > + * > + * Copyright 2007-8 Sali Lab. All rights reserved. > + * > + */ > +#include "IMP/core/Matrix3D.h" > +IMPCORE_BEGIN_NAMESPACE > + > +IMPCORE_END_NAMESPACE > > > Property changes on: trunk/modules/core/src/Matrix3D.cpp > ___________________________________________________________________ > Added: svn:mergeinfo > + > > Copied: trunk/modules/core/src/Rotation3D.cpp (from rev 939, trunk/ > modules/misc/src/Rotation3D.cpp) > =================================================================== > --- trunk/modules/core/src/Rotation3D.cpp > (rev 0) > +++ trunk/modules/core/src/Rotation3D.cpp 2008-12-03 20:26:15 UTC > (rev 940) > @@ -0,0 +1,10 @@ > +/** > + * \file Rotation3D.cpp \brief Simple 3D rotation class. > + * > + * Copyright 2007-8 Sali Lab. All rights reserved. > + * > + */ > +#include "IMP/core/Rotation3D.h" > +IMPCORE_BEGIN_NAMESPACE > + > +IMPCORE_END_NAMESPACE > > > Property changes on: trunk/modules/core/src/Rotation3D.cpp > ___________________________________________________________________ > Added: svn:mergeinfo > + > > Modified: trunk/modules/core/src/SConscript > =================================================================== > --- trunk/modules/core/src/SConscript 2008-12-03 03:57:02 UTC (rev > 939) > +++ trunk/modules/core/src/SConscript 2008-12-03 20:26:15 UTC (rev > 940) > @@ -38,6 +38,7 @@ > 'HierarchyDecorator.cpp', > 'ListPairContainer.cpp', > 'ListSingletonContainer.cpp', > + 'Matrix3D.cpp', > 'MaxChangeScoreState.cpp', > 'MaximumChangeScoreState.cpp', > 'MaximumPairScoreRestraint.cpp', > @@ -64,6 +65,7 @@ > 'QuadraticClosePairsFinder.cpp', > 'ResidueDecorator.cpp', > 'RestraintSet.cpp', > + 'Rotation3D.cpp', > 'SingletonContainer.cpp', > 'SingletonContainerSet.cpp', > 'SingletonListRestraint.cpp', > @@ -72,6 +74,7 @@ > 'SingletonsScoreState.cpp', > 'SphereDistancePairScore.cpp', > 'SteepestDescent.cpp', > + 'Transformation3D.cpp', > 'TransformedDistancePairScore.cpp', > 'TripletChainRestraint.cpp', > 'TypedPairScore.cpp', > > Copied: trunk/modules/core/src/Transformation3D.cpp (from rev 939, > trunk/modules/misc/src/Transformation3D.cpp) > =================================================================== > --- trunk/modules/core/src/ > Transformation3D.cpp (rev 0) > +++ trunk/modules/core/src/Transformation3D.cpp 2008-12-03 20:26:15 > UTC (rev 940) > @@ -0,0 +1,12 @@ > +/** > + * \file Transformation3D.cpp > + * \brief Simple 3D transformation class. > + * > + * Copyright 2007-8 Sali Lab. All rights reserved. > + */ > +#include "IMP/core/Transformation3D.h" > +#include "IMP/core/XYZDecorator.h" > + > +IMPCORE_BEGIN_NAMESPACE > + > +IMPCORE_END_NAMESPACE > > > Property changes on: trunk/modules/core/src/Transformation3D.cpp > ___________________________________________________________________ > Added: svn:mergeinfo > + > > > Property changes on: trunk/modules/core/test/transformation > ___________________________________________________________________ > Added: svn:ignore > + *.pyc > > Added: svn:mergeinfo > + > > Modified: trunk/modules/core/test/transformation/ > test_particles_transformation.py > =================================================================== > --- trunk/modules/misc/test/transformation/ > test_particles_transformation.py 2008-12-03 03:57:02 UTC (rev 939) > +++ trunk/modules/core/test/transformation/ > test_particles_transformation.py 2008-12-03 20:26:15 UTC (rev 940) > @@ -1,6 +1,5 @@ > import unittest > import IMP.utils > -import IMP.misc > import IMP.core > import IMP.test, IMP > > @@ -27,9 +26,9 @@ > > 82.603,46.874,76.53)) > def test_transformation(self): > """Test the TransformationFunction class""" > - r = IMP.misc.rotation_from_fixed_xyz(0.2,0.8,-0.4) > - t=IMP.misc.Transformation3D(r,IMP.Vector3D(20.0,-12.4,18.6)) > - tf=IMP.misc.TransformationFunction(t) > + r = IMP.core.rotation_from_fixed_xyz(0.2,0.8,-0.4) > + t=IMP.core.Transformation3D(r,IMP.Vector3D(20.0,-12.4,18.6)) > + tf=IMP.core.TransformationFunction(t) > r = tf.apply(self.particles) > tp=[] > tp.append(IMP.Vector3D(47.948, -86.769, 118.648)) > > Modified: trunk/modules/core/test/transformation/ > test_rigid_transformation.py > =================================================================== > --- trunk/modules/misc/test/transformation/ > test_rigid_transformation.py 2008-12-03 03:57:02 UTC (rev 939) > +++ trunk/modules/core/test/transformation/ > test_rigid_transformation.py 2008-12-03 20:26:15 UTC (rev 940) > @@ -2,7 +2,6 @@ > import IMP > import IMP.utils > import IMP.test > -import IMP.misc > > class RigidTransformationTests(IMP.test.TestCase): > """Test particles""" > @@ -16,8 +15,8 @@ > > def test_transformation(self): > """Check that the rotation function is ok""" > - rt = IMP.misc.rotation_from_fixed_xyz(0.2,0.8,-0.4) > - t=IMP.misc.Transformation3D(rt,IMP.Vector3D(20.0,-12.4,18.6)) > + rt = IMP.core.rotation_from_fixed_xyz(0.2,0.8,-0.4) > + t=IMP.core.Transformation3D(rt,IMP.Vector3D(20.0,-12.4,18.6)) > v1_t = t.transform(self.v1) > v2_t = t.transform(self.v2) > v1_t_res=IMP.Vector3D(-62.517,86.209, 41.139) > > Modified: trunk/modules/misc/include/SConscript > =================================================================== > --- trunk/modules/misc/include/SConscript 2008-12-03 03:57:02 UTC > (rev 939) > +++ trunk/modules/misc/include/SConscript 2008-12-03 20:26:15 UTC > (rev 940) > @@ -3,12 +3,7 @@ > files = [ > 'ChildrenParticleRefiner.h', > 'LowestRefinedPairScore.h', > - 'Matrix3D.h', > - 'ParticleFunction.h', > 'RefineOncePairScore.h', > - 'Rotation3D.h', > - 'Transformation3D.h', > - 'TransformationFunction.h', > 'TunnelSingletonScore.h', > 'WormLikeChain.h', > ] > > Modified: trunk/modules/misc/src/SConscript > =================================================================== > --- trunk/modules/misc/src/SConscript 2008-12-03 03:57:02 UTC (rev > 939) > +++ trunk/modules/misc/src/SConscript 2008-12-03 20:26:15 UTC (rev > 940) > @@ -4,10 +4,7 @@ > files = [ > 'ChildrenParticleRefiner.cpp', > 'LowestRefinedPairScore.cpp', > - 'Matrix3D.cpp', > 'RefineOncePairScore.cpp', > - 'Rotation3D.cpp', > - 'Transformation3D.cpp', > 'TunnelSingletonScore.cpp', > ] > > > _______________________________________________ > IMP-commits mailing list > IMP-commits@salilab.org > https://salilab.org/mailman/listinfo/imp-commits