Hi,

I am running into a few failures in the test cases provided.

[tru@optiplex7020 ninja-imp-2.6.2-CGAL-openmpi-1.10.2-disable-dlopen]$ module li Currently Loaded Modulefiles: 1) ninja-1.7.1 5) libTAU-1.0.1 2) Python-2.7.11 6) CGAL-4.8 3) doxygen-1.8.6 7) modeller/9.16-python2.x 4) openmpi-1.10.2-disable-dlopen

CentOS-7 openmpi self rebuild with --disable-dlopen

imp 2.6.2 built with: #!/bin/bash module purge

module add \ Python-2.7.11 \ doxygen-1.8.6 \ ninja-1.7.1 \ openmpi-1.10.2-disable-dlopen \ libTAU-1.0.1 \ CGAL-4.8 \ modeller/9.16-python2.x

module li

cmake ../imp-2.6.2 -DCMAKE_BUILD_TYPE=Release \ -G Ninja \ -DCMAKE_MAKE_PROGRAM=/isb2016/ninja-1.7.1/ninja \ -DCMAKE_C_COMPILER=mpicc \ -DCMAKE_CXX_COMPILER=mpicxx \ -DIMP_MAX_CHECKS=NONE \ -DCMAKE_INSTALL_PREFIX=/isb2016/imp-2.6.2 \ -DCMAKE_INCLUDE_PATH="/isb2016/Python-2.7.11;/isb2016/Python-2.7.11/include;/isb 2016/CGAL-4.8/include" \ -DCMAKE_LIBRARY_PATH="/isb2016/libTAU-1.0.1/lib;/isb2016/Python-2.7.11/lib;/isb2 016/CGAL-4.8/lib" \ -DPYTHON_LIBRARY=/isb2016/Python-2.7.11/lib \ -DPYTHON_INCLUDE_DIR="/isb2016/Python-2.7.11;/isb2016/Python-2.7.11/include/pyth on2.7" \ -DLIBTAU_INCLUDE_DIR="/isb2016/libTAU-1.0.1" ninja ninja -j1 test 2>&1 |tee ninja.test.log

Failed tests reported from the log The following tests FAILED: 373 - IMP.atom-expensive_test_bd.py (Failed) 764 - IMP.pmi-expensive_test_cross_link_ms_restraint.py (Failed) 796 - IMP.EMageFit-expensive_test_domino_modeling.py (Failed) 797 - IMP.EMageFit-expensive_test_mc_modeling.py (Failed) Errors while running CTest ninja: build stopped: subcommand failed.

I have re-run all the failed test manually with: ... find ../imp-2.6.2/ -name expensive_test_mc_modeling.py ./setup_environment.sh python ../imp-2.6.2/modules/EMageFit/test/expensive_test_mc_modeling.py 2>&1 | tee IMP.EMageFit-expensive_test_mc_modeling.py.log ...

[tru@optiplex7020 ninja-imp-2.6.2-CGAL-openmpi-1.10.2-disable-dlopen]$ grep ^UsageException IMP*.log IMP.atom-expensive_test_bd.py.log:UsageException: Method IMP::core::SingletonRestraint::SingletonRestraint(IMP::SingletonScore*, IMP::Particle*, std::string) is deprecated. WARNING: Use the index-based constructor instead. IMP.atom-expensive_test_bd.py.log:UsageException: Method IMP::core::SingletonRestraint::SingletonRestraint(IMP::SingletonScore*, IMP::Particle*, std::string) is deprecated. WARNING: Use the index-based constructor instead. IMP.EMageFit-expensive_test_domino_modeling.py.log:UsageException: Method IMP::core::PairRestraint::PairRestraint(IMP::PairScore*, const ParticlePair&, std::string) is deprecated. WARNING: Use the index-based constructor instead. IMP.EMageFit-expensive_test_mc_modeling.py.log:UsageException: Method IMP::core::PairRestraint::PairRestraint(IMP::PairScore*, const ParticlePair&, std::string) is deprecated. WARNING: Use the index-based constructor instead. IMP.pmi-expensive_test_cross_link_ms_restraint.py.log:UsageException: Object <class 'IMP.pmi.restraints.crosslinking.ISDCrossLinkMS'> is deprecated. Use IMP.pmi.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint instead. IMP.pmi-expensive_test_cross_link_ms_restraint.py.log:UsageException: Object <class 'IMP.pmi.restraints.crosslinking.ISDCrossLinkMS'> is deprecated. Use IMP.pmi.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint instead.

Thanks,

Tru