thanks. it seems like my browser cached an older version of the example or something. the example i now have on my browser seems to be ok.

cheers

frido

On Fri, Apr 16, 2010 at 9:40 AM, Keren Lasker kerenl@salilab.org wrote: > hey Frido - > not sure if it is going to solve all of the problem but > ListSingletonContainer is now part of IMP.container > On Apr 16, 2010, at 12:36 AM, Friedrich Foerster wrote: > >> dear all, >> >> i have been trying to run the example for the non-bonded list in IMP >> (the official release 1.0) and sadly, it did not work: >> >> sendling 1026% /fs/pool/pool-foerster/apps/src/imp/branches/1.0/ >> tools/imppy.sh >> python test_imp.py >> Traceback (most recent call last): >>  File "test_imp.py", line 10, in <module> >>    ps = >> IMP.core.ListSingletonContainer(IMP.core.create_xyzr_particles(m, >> 20, 1.0)) >> AttributeError: 'module' object has no attribute >> 'ListSingletonContainer' >> >> >> >> test_imp.py is the IMP example: >> >> import IMP >> import IMP.core >> import IMP.atom >> >> # This example addes a restraint on nonbonded interactions >> # after excluding a set of bonded interactions. >> >> m= IMP.Model() >> # The set of particles >> ps = >> IMP.core.ListSingletonContainer(IMP.core.create_xyzr_particles(m, >> 20, 1.0)) >> >> # create a bond between two particles >> bd0= IMP.atom.Bonded.setup_particle(ps.get_particle(0)) >> bd1= IMP.atom.Bonded.setup_particle(ps.get_particle(1)) >> IMP.atom.custom_bond(bd0, bd1, 2.0) >> >> # Set up the nonbonded list for all pairs at are touching >> # and let things move 3 before updating the list >> nbl= IMP.core.ClosePairContainer(ps, 0.0, 3.0) >> nbl.add_pair_filter(IMP.atom.BondedPairFilter()) >> >> # Set up excluded volume >> sdps= >> IMP.core.SphereDistancePairScore(IMP.core.HarmonicLowerBound(0,1)) >> evr= IMP.core.PairsRestraint(sdps, nbl) >> m.add_restraint(evr) >> >> # Set up optimizer >> o= IMP.core.ConjugateGradients() >> o.set_model(m) >> >> o.optimize(1000) >> >> >> >> any suggestions? >> >> thanks >> >> >> p.s.: IMP is compiled with build='fast'. >> all 'required' packages (specified in the installation doc) are >> installed: >>    * scons (0.98 or later) >>    * Boost (1.33 or later) >>    * A Subversion (svn) client to access the repository >> >> If you wish to build the Python interfaces, you will also need: >> >>    * Python (2.3 or later) >>    * SWIG (1.3.40 or later) >> >> >> >> -- >> Dr. Friedrich Foerster >> Max-Planck Institut fuer Biochemie >> Am Klopferspitz 18 >> D-82152 Martinsried >> >> Tel: +49 89 8578 2632 >> Fax: +49 89 8578 2641 >> >> www.biochem.mpg.de/foerster >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev > >