My guess is that r680 (Daniel's attribute table simplification) is to blame here. A little pruning of the testcase tree (rm -rf of some directories, disabling of some test methods) yields the following minimal testset: particles/test_particles.py (test_remove_attributes) and states/test_nonbonded_list.py (test_bipartite_quadratic and test_bipartite_bbox):
synth% scons wine=true test ... Test bipartite bbox NBL ... ok Test bipartite quadratic NBL ... ok Test that attributes can be removed ... wine: Unhandled page fault on read access to 0x206fdbb0 at address 0x8d005a (thread 0009), starting debugger...
Ben
-------- Original Message -------- Subject: Build system failure, 08/28/2008 Date: Thu, 28 Aug 2008 07:00:02 -0700 From: build-system@salilab.org To: ben@salilab.org
Build system failed on 08/28/2008. Please see https://salilab.org/internal/imp/tests.html for full details.
I'll try to fix it before I have to take off.
On Aug 28, 2008, at 10:20 AM, Ben Webb wrote:
> My guess is that r680 (Daniel's attribute table simplification) is to > blame here. A little pruning of the testcase tree (rm -rf of some > directories, disabling of some test methods) yields the following > minimal testset: particles/test_particles.py (test_remove_attributes) > and states/test_nonbonded_list.py (test_bipartite_quadratic and > test_bipartite_bbox): > > synth% scons wine=true test > ... > Test bipartite bbox NBL ... ok > Test bipartite quadratic NBL ... ok > Test that attributes can be removed ... wine: Unhandled page fault on > read access to 0x206fdbb0 at address 0x8d005a (thread 0009), starting > debugger... > > Ben > > -------- Original Message -------- > Subject: Build system failure, 08/28/2008 > Date: Thu, 28 Aug 2008 07:00:02 -0700 > From: build-system@salilab.org > To: ben@salilab.org > > Build system failed on 08/28/2008. > Please see https://salilab.org/internal/imp/tests.html for full > details. > > -- > ben@salilab.org http://salilab.org/~ben/ > "It is a capital mistake to theorize before one has data." > - Sir Arthur Conan Doyle > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev
Now that I think about it, do we have any reasonable way of debugging with wine? I wouldn't expect gdb to work.
On Aug 28, 2008, at 10:20 AM, Ben Webb wrote:
> My guess is that r680 (Daniel's attribute table simplification) is to > blame here. A little pruning of the testcase tree (rm -rf of some > directories, disabling of some test methods) yields the following > minimal testset: particles/test_particles.py (test_remove_attributes) > and states/test_nonbonded_list.py (test_bipartite_quadratic and > test_bipartite_bbox): > > synth% scons wine=true test > ... > Test bipartite bbox NBL ... ok > Test bipartite quadratic NBL ... ok > Test that attributes can be removed ... wine: Unhandled page fault on > read access to 0x206fdbb0 at address 0x8d005a (thread 0009), starting > debugger... > > Ben > > -------- Original Message -------- > Subject: Build system failure, 08/28/2008 > Date: Thu, 28 Aug 2008 07:00:02 -0700 > From: build-system@salilab.org > To: ben@salilab.org > > Build system failed on 08/28/2008. > Please see https://salilab.org/internal/imp/tests.html for full > details. > > -- > ben@salilab.org http://salilab.org/~ben/ > "It is a capital mistake to theorize before one has data." > - Sir Arthur Conan Doyle > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev
Are you using CGAL with wine? If not, then bbox NBL is actually a grid NBL and I think there were a couple of bugs in that which I fixed but never made it into IMP svn. If you are using CGAL with wine, how do I do that?
On Aug 28, 2008, at 10:20 AM, Ben Webb wrote:
> My guess is that r680 (Daniel's attribute table simplification) is to > blame here. A little pruning of the testcase tree (rm -rf of some > directories, disabling of some test methods) yields the following > minimal testset: particles/test_particles.py (test_remove_attributes) > and states/test_nonbonded_list.py (test_bipartite_quadratic and > test_bipartite_bbox): > > synth% scons wine=true test > ... > Test bipartite bbox NBL ... ok > Test bipartite quadratic NBL ... ok > Test that attributes can be removed ... wine: Unhandled page fault on > read access to 0x206fdbb0 at address 0x8d005a (thread 0009), starting > debugger... > > Ben > > -------- Original Message -------- > Subject: Build system failure, 08/28/2008 > Date: Thu, 28 Aug 2008 07:00:02 -0700 > From: build-system@salilab.org > To: ben@salilab.org > > Build system failed on 08/28/2008. > Please see https://salilab.org/internal/imp/tests.html for full > details. > > -- > ben@salilab.org http://salilab.org/~ben/ > "It is a capital mistake to theorize before one has data." > - Sir Arthur Conan Doyle > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev
participants (2)
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Ben Webb -
Daniel Russel