Hi, I am receiving this error for the first time after just updating:
Checking for Boost version >= 1.33...
Boost version >= 1.33 is required to build IMP, but it could not be found on your system. Please see config.log for more details.
In particular, if you have Boost installed in a non-standard location, please use the 'includepath' option to add this location to the search path. For example, a Mac using Boost installed with MacPorts will have the Boost headers in /opt/local/include, so edit (or create) config.py and add the line
includepath='/opt/local/include'
I'm trying to include it directly with this line in config.py, but no luck:
includepath='/usr/include/boost'
Help! ;)
You can look in your config.log to see what exactly the error was when trying to detect boost (it tries to compile a little test program which includes the boost version header). Post the contents if you can't figure it out.
The include path should be such that "boost/version.hpp" is located in a directory in it, so adding "/usr/include/boost" is wrong, it would be "/usr/include". However, "/usr/include" is searched by default, so you shouldn't have to add it.
It may not be boost related and may just be that you are passing some bad compiler flags which break all compilations. It might be worth adding a test for that to make error messages less confusing.
On Dec 1, 2009, at 10:10 PM, Javier Ángel Velázquez Muriel wrote:
> > Hi, I am receiving this error for the first time after just updating: > > > Checking for Boost version >= 1.33... > > Boost version >= 1.33 is required to build IMP, but it could not be found > on your system. Please see config.log for more details. > > In particular, if you have Boost installed in a non-standard location, > please use the 'includepath' option to add this location to the search path. > For example, a Mac using Boost installed with MacPorts will have the Boost > headers in /opt/local/include, so edit (or create) config.py and add the line > > includepath='/opt/local/include' > > I'm trying to include it directly with this line in config.py, but no luck: > > includepath='/usr/include/boost' > > Help! ;) > > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev
No luck, something else is going on here. I went to config.log and:
1) Received a message that conftest_1.c does not exist. 2) Tried svn update. Does not work, does not add the files. 3) Copied the files from .sconf_temp/ from a PREVIOUS version of imp that I save 'just in case'. 4) Sort of works better, compiles the .c files in .sconf_temp/, but I still get this:
file /chime1/home/javi/imp/trunk/scons_tools/__init__.py,line 205: Configure(confdir = .sconf_temp) scons: Configure: Checking whether compiler supports -fvisibility... scons: Configure: ".sconf_temp/conftest_0.c" is up to date. scons: Configure: The original builder output was: |.sconf_temp/conftest_0.c <- | | | |__attribute__ ((visibility("default"))) | |int main(void) | |{ return 0; } | | | gcc -o .sconf_temp/conftest_0.o -c -Wall -O2 -fvisibility=hidden .sconf_temp/conftest_0.c gcc -o .sconf_temp/conftest_0 .sconf_temp/conftest_0.o scons: Configure: yes
file /chime1/home/javi/imp/trunk/scons_tools/boost.py,line 31: Configure(confdir = .sconf_temp) scons: Configure: Checking for Boost version >= 1.33... scons: Configure: ".sconf_temp/conftest_1.cpp" is up to date. scons: Configure: The original builder output was: |.sconf_temp/conftest_1.cpp <- | |#include <boost/version.hpp> | |#include <iostream> | | | | int main() | | { | | std::cout << BOOST_LIB_VERSION <<std::endl; | | return BOOST_VERSION >= 103300 ? 0 : 1; | | } | | | g++ -o .sconf_temp/conftest_1.o -c -Woverloaded-virtual -Wall -O2 .sconf_temp/conftest_1.cpp scons: Configure: ".sconf_temp/conftest_1" is up to date. scons: Configure: The original builder output was: |g++ -o .sconf_temp/conftest_1 .sconf_temp/conftest_1.o | .sconf_temp/conftest_1 > .sconf_temp/conftest_1.out scons: Configure:
5) I've tried changing the includepath to 'usr/include' and a local copy of boost in my home dir, taking care of the /boost error. No luck. Brainless now :P
2009/12/1 Daniel Russel drussel@gmail.com
> You can look in your config.log to see what exactly the error was when > trying to detect boost (it tries to compile a little test program which > includes the boost version header). Post the contents if you can't figure it > out. > > The include path should be such that "boost/version.hpp" is located in a > directory in it, so adding "/usr/include/boost" is wrong, it would be > "/usr/include". However, "/usr/include" is searched by default, so you > shouldn't have to add it. > > It may not be boost related and may just be that you are passing some bad > compiler flags which break all compilations. It might be worth adding a test > for that to make error messages less confusing. > > > On Dec 1, 2009, at 10:10 PM, Javier Ángel Velázquez Muriel wrote: > > > Hi, I am receiving this error for the first time after just updating: > > > Checking for Boost version >= 1.33... > > Boost version >= 1.33 is required to build IMP, but it could not be found > on your system. Please see config.log for more details. > > In particular, if you have Boost installed in a non-standard location, > please use the 'includepath' option to add this location to the search > path. > For example, a Mac using Boost installed with MacPorts will have the Boost > headers in /opt/local/include, so edit (or create) config.py and add the > line > > includepath='/opt/local/include' > > I'm trying to include it directly with this line in config.py, but no luck: > > includepath='/usr/include/boost' > > Help! ;) > > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev > > > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev > >
The log just cuts off like that? Scons may have gotten messed up. Try deleting .scon*. Or did you fill up you hard drive?
On Dec 1, 2009, at 10:56 PM, Javier Ángel Velázquez Muriel <javi@salilab.o rg> wrote:
> No luck, something else is going on here. I went to config.log and: > > 1) Received a message that conftest_1.c does not exist. > 2) Tried svn update. Does not work, does not add the files. > 3) Copied the files from .sconf_temp/ from a PREVIOUS version of imp > that I save 'just in case'. > 4) Sort of works better, compiles the .c files in .sconf_temp/, but > I still get this: > > > file /chime1/home/javi/imp/trunk/scons_tools/__init__.py,line 205: > Configure(confdir = .sconf_temp) > scons: Configure: Checking whether compiler supports -fvisibility... > scons: Configure: ".sconf_temp/conftest_0.c" is up to date. > scons: Configure: The original builder output was: > |.sconf_temp/conftest_0.c <- > | | > | |__attribute__ ((visibility("default"))) > | |int main(void) > | |{ return 0; } > | | > | > gcc -o .sconf_temp/conftest_0.o -c -Wall -O2 - > fvisibility=hidden .sconf_temp/conftest_0.c > gcc -o .sconf_temp/conftest_0 .sconf_temp/conftest_0.o > scons: Configure: yes > > > file /chime1/home/javi/imp/trunk/scons_tools/boost.py,line 31: > Configure(confdir = .sconf_temp) > scons: Configure: Checking for Boost version >= 1.33... > scons: Configure: ".sconf_temp/conftest_1.cpp" is up to date. > scons: Configure: The original builder output was: > |.sconf_temp/conftest_1.cpp <- > | |#include <boost/version.hpp> > | |#include <iostream> > | | > | | int main() > | | { > | | std::cout << BOOST_LIB_VERSION <std::endl; | | return BOOST_VERSION >= 103300 ? 0 : 1; > | | } > | | > | > g++ -o .sconf_temp/conftest_1.o -c -Woverloaded-virtual -Wall - > O2 .sconf_temp/conftest_1.cpp > scons: Configure: ".sconf_temp/conftest_1" is up to date. > scons: Configure: The original builder output was: > |g++ -o .sconf_temp/conftest_1 .sconf_temp/conftest_1.o > | > .sconf_temp/conftest_1 > .sconf_temp/conftest_1.out > scons: Configure: > > 5) I've tried changing the includepath to 'usr/include' and a local > copy of boost in my home dir, taking care of the /boost error. No > luck. Brainless now :P > > > 2009/12/1 Daniel Russel drussel@gmail.com > You can look in your config.log to see what exactly the error was > when trying to detect boost (it tries to compile a little test > program which includes the boost version header). Post the contents > if you can't figure it out. > > The include path should be such that "boost/version.hpp" is located > in a directory in it, so adding "/usr/include/boost" is wrong, it > would be "/usr/include". However, "/usr/include" is searched by > default, so you shouldn't have to add it. > > It may not be boost related and may just be that you are passing > some bad compiler flags which break all compilations. It might be > worth adding a test for that to make error messages less confusing. > > > On Dec 1, 2009, at 10:10 PM, Javier Ángel Velázquez Muriel wrote: > >> >> Hi, I am receiving this error for the first time after just updating: >> >> >> Checking for Boost version >= 1.33... >> >> Boost version >= 1.33 is required to build IMP, but it could not be >> found >> on your system. Please see config.log for more details. >> >> In particular, if you have Boost installed in a non-standard >> location, >> please use the 'includepath' option to add this location to the >> search path. >> For example, a Mac using Boost installed with MacPorts will have >> the Boost >> headers in /opt/local/include, so edit (or create) config.py and >> add the line >> >> includepath='/opt/local/include' >> >> I'm trying to include it directly with this line in config.py, but >> no luck: >> >> includepath='/usr/include/boost' >> >> Help! ;) >> >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev > > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev > > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev
Elina gave a good suggestion. I started with a fresh checkout and worked until this:
scons: *** Do not know how to make target `bin'. Stop. scons: building terminated because of errors.
I bet is related with last week improvements. Solution? Thanks!
2009/12/2 Daniel Russel drussel@gmail.com
> The log just cuts off like that? Scons may have gotten messed up. Try > deleting .scon*. Or did you fill up you hard drive? > > > > On Dec 1, 2009, at 10:56 PM, Javier Ángel Velázquez Muriel < > javi@salilab.org> wrote: > > No luck, something else is going on here. I went to config.log and: > > 1) Received a message that conftest_1.c does not exist. > 2) Tried svn update. Does not work, does not add the files. > 3) Copied the files from .sconf_temp/ from a PREVIOUS version of imp that I > save 'just in case'. > 4) Sort of works better, compiles the .c files in .sconf_temp/, but I still > get this: > > > file /chime1/home/javi/imp/trunk/scons_tools/__init__.py,line 205: > Configure(confdir = .sconf_temp) > scons: Configure: Checking whether compiler supports -fvisibility... > scons: Configure: ".sconf_temp/conftest_0.c" is up to date. > scons: Configure: The original builder output was: > |.sconf_temp/conftest_0.c <- > | | > | |__attribute__ ((visibility("default"))) > | |int main(void) > | |{ return 0; } > | | > | > gcc -o .sconf_temp/conftest_0.o -c -Wall -O2 -fvisibility=hidden > .sconf_temp/conftest_0.c > gcc -o .sconf_temp/conftest_0 .sconf_temp/conftest_0.o > scons: Configure: yes > > > file /chime1/home/javi/imp/trunk/scons_tools/boost.py,line 31: > Configure(confdir = .sconf_temp) > scons: Configure: Checking for Boost version >= 1.33... > scons: Configure: ".sconf_temp/conftest_1.cpp" is up to date. > scons: Configure: The original builder output was: > |.sconf_temp/conftest_1.cpp <- > | |#include <boost/version.hpp> > | |#include <iostream> > | | > | | int main() > | | { > | | std::cout << BOOST_LIB_VERSION <std::endl; | | return BOOST_VERSION >= 103300 ? 0 : 1; > | | } > | | > | > g++ -o .sconf_temp/conftest_1.o -c -Woverloaded-virtual -Wall -O2 > .sconf_temp/conftest_1.cpp > scons: Configure: ".sconf_temp/conftest_1" is up to date. > scons: Configure: The original builder output was: > |g++ -o .sconf_temp/conftest_1 .sconf_temp/conftest_1.o > | > .sconf_temp/conftest_1 > .sconf_temp/conftest_1.out > scons: Configure: > > 5) I've tried changing the includepath to 'usr/include' and a local copy of > boost in my home dir, taking care of the /boost error. No luck. Brainless > now :P > > > 2009/12/1 Daniel Russel < drussel@gmail.comdrussel@gmail.com> > >> You can look in your config.log to see what exactly the error was when >> trying to detect boost (it tries to compile a little test program which >> includes the boost version header). Post the contents if you can't figure it >> out. >> >> The include path should be such that "boost/version.hpp" is located in a >> directory in it, so adding "/usr/include/boost" is wrong, it would be >> "/usr/include". However, "/usr/include" is searched by default, so you >> shouldn't have to add it. >> >> It may not be boost related and may just be that you are passing some bad >> compiler flags which break all compilations. It might be worth adding a test >> for that to make error messages less confusing. >> >> >> On Dec 1, 2009, at 10:10 PM, Javier Ángel Velázquez Muriel wrote: >> >> >> Hi, I am receiving this error for the first time after just updating: >> >> >> Checking for Boost version >= 1.33... >> >> Boost version >= 1.33 is required to build IMP, but it could not be found >> on your system. Please see config.log for more details. >> >> In particular, if you have Boost installed in a non-standard location, >> please use the 'includepath' option to add this location to the search >> path. >> For example, a Mac using Boost installed with MacPorts will have the Boost >> headers in /opt/local/include, so edit (or create) config.py and add the >> line >> >> includepath='/opt/local/include' >> >> I'm trying to include it directly with this line in config.py, but no >> luck: >> >> includepath='/usr/include/boost' >> >> Help! ;) >> >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.orgIMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev >> https://salilab.org/mailman/listinfo/imp-dev >> >> >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.orgIMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev >> https://salilab.org/mailman/listinfo/imp-dev >> >> > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev > > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev > >
Sorry, default builds were broken (but targeted ones were not, so I hadn't noticed and the tests hadn't shown anything). Fixed now.
On Dec 2, 2009, at 11:48 AM, Javier Ángel Velázquez Muriel wrote:
> > Elina gave a good suggestion. I started with a fresh checkout and worked until this: > > scons: *** Do not know how to make target `bin'. Stop. > scons: building terminated because of errors. > > I bet is related with last week improvements. Solution? > Thanks! > > > 2009/12/2 Daniel Russel drussel@gmail.com > The log just cuts off like that? Scons may have gotten messed up. Try deleting .scon*. Or did you fill up you hard drive? > > > > On Dec 1, 2009, at 10:56 PM, Javier Ángel Velázquez Muriel javi@salilab.org wrote: > >> No luck, something else is going on here. I went to config.log and: >> >> 1) Received a message that conftest_1.c does not exist. >> 2) Tried svn update. Does not work, does not add the files. >> 3) Copied the files from .sconf_temp/ from a PREVIOUS version of imp that I save 'just in case'. >> 4) Sort of works better, compiles the .c files in .sconf_temp/, but I still get this: >> >> >> file /chime1/home/javi/imp/trunk/scons_tools/__init__.py,line 205: >> Configure(confdir = .sconf_temp) >> scons: Configure: Checking whether compiler supports -fvisibility... >> scons: Configure: ".sconf_temp/conftest_0.c" is up to date. >> scons: Configure: The original builder output was: >> |.sconf_temp/conftest_0.c <- >> | | >> | |__attribute__ ((visibility("default"))) >> | |int main(void) >> | |{ return 0; } >> | | >> | >> gcc -o .sconf_temp/conftest_0.o -c -Wall -O2 -fvisibility=hidden .sconf_temp/conftest_0.c >> gcc -o .sconf_temp/conftest_0 .sconf_temp/conftest_0.o >> scons: Configure: yes >> >> >> file /chime1/home/javi/imp/trunk/scons_tools/boost.py,line 31: >> Configure(confdir = .sconf_temp) >> scons: Configure: Checking for Boost version >= 1.33... >> scons: Configure: ".sconf_temp/conftest_1.cpp" is up to date. >> scons: Configure: The original builder output was: >> |.sconf_temp/conftest_1.cpp <- >> | |#include <boost/version.hpp> >> | |#include <iostream> >> | | >> | | int main() >> | | { >> | | std::cout << BOOST_LIB_VERSION <std::endl; > | | return BOOST_VERSION >= 103300 ? 0 : 1; >> | | } >> | | >> | >> g++ -o .sconf_temp/conftest_1.o -c -Woverloaded-virtual -Wall -O2 .sconf_temp/conftest_1.cpp >> scons: Configure: ".sconf_temp/conftest_1" is up to date. >> scons: Configure: The original builder output was: >> |g++ -o .sconf_temp/conftest_1 .sconf_temp/conftest_1.o >> | >> .sconf_temp/conftest_1 > .sconf_temp/conftest_1.out >> scons: Configure: >> >> 5) I've tried changing the includepath to 'usr/include' and a local copy of boost in my home dir, taking care of the /boost error. No luck. Brainless now :P >> >> >> 2009/12/1 Daniel Russel drussel@gmail.com >> You can look in your config.log to see what exactly the error was when trying to detect boost (it tries to compile a little test program which includes the boost version header). Post the contents if you can't figure it out. >> >> The include path should be such that "boost/version.hpp" is located in a directory in it, so adding "/usr/include/boost" is wrong, it would be "/usr/include". However, "/usr/include" is searched by default, so you shouldn't have to add it. >> >> It may not be boost related and may just be that you are passing some bad compiler flags which break all compilations. It might be worth adding a test for that to make error messages less confusing. >> >> >> On Dec 1, 2009, at 10:10 PM, Javier Ángel Velázquez Muriel wrote: >> >>> >>> Hi, I am receiving this error for the first time after just updating: >>> >>> >>> Checking for Boost version >= 1.33... >>> >>> Boost version >= 1.33 is required to build IMP, but it could not be found >>> on your system. Please see config.log for more details. >>> >>> In particular, if you have Boost installed in a non-standard location, >>> please use the 'includepath' option to add this location to the search path. >>> For example, a Mac using Boost installed with MacPorts will have the Boost >>> headers in /opt/local/include, so edit (or create) config.py and add the line >>> >>> includepath='/opt/local/include' >>> >>> I'm trying to include it directly with this line in config.py, but no luck: >>> >>> includepath='/usr/include/boost' >>> >>> Help! ;) >>> >>> >>> _______________________________________________ >>> IMP-dev mailing list >>> IMP-dev@salilab.org >>> https://salilab.org/mailman/listinfo/imp-dev >> >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev >> >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev > > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev
-
Daniel Russel -
Javier Ángel Velázquez Muriel