hi, Trying to implement misc.TransformationModifier that inherits from core.SingletonModifier
#include "misc_exports.h" #include "internal/misc_version_info.h" ... #include "IMP/core/SingletonModifier.h"
IMPMISC_BEGIN_NAMESPACE
class IMPMISCEXPORT TransformationModifier : public SingletonModifier
The compiler can not recognize SingletonModifier, specifically I get: g++ -pthread -o modules/misc/pyext/misc_wrap.os -c -g -fPIC -fno- strict-aliasing -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -- param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC - Ibuild/include -I/usr/include/python2.5 modules/misc/pyext/misc_wrap.cc In file included from build/include/IMP/misc.h:22, from modules/misc/pyext/misc_wrap.cc:3236:
should I change something in the SConsript file of mics/include?
thank you, Keren.
It is in the core namespace. So on the C++ side you need "public IMP::core::SingletonModifier". The python side doesn't work yet. I asked Ben if he knows how to fix it, but haven't gotten a response.
On Nov 29, 2008, at 4:31 PM, Keren Lasker wrote:
> hi, > Trying to implement misc.TransformationModifier that inherits from > core.SingletonModifier > > #include "misc_exports.h" > #include "internal/misc_version_info.h" > ... > #include "IMP/core/SingletonModifier.h" > > > IMPMISC_BEGIN_NAMESPACE > > class IMPMISCEXPORT TransformationModifier : public SingletonModifier > > The compiler can not recognize SingletonModifier, specifically I get: > g++ -pthread -o modules/misc/pyext/misc_wrap.os -c -g -fPIC -fno- > strict-aliasing -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -- > param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC - > Ibuild/include -I/usr/include/python2.5 modules/misc/pyext/ > misc_wrap.cc > In file included from build/include/IMP/misc.h:22, > from modules/misc/pyext/misc_wrap.cc:3236: > > > should I change something in the SConsript file of mics/include? > > thank you, > Keren. > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev
ok. I think I'll just check in the transformation class with the old TransformationFunction and once it will be sort out I'll switch to TrasnformationModifier.
On Nov 30, 2008, at 2:41 AM, Daniel Russel wrote:
> It is in the core namespace. So on the C++ side you need "public > IMP::core::SingletonModifier". The python side doesn't work yet. I > asked Ben if he knows how to fix it, but haven't gotten a response. > > On Nov 29, 2008, at 4:31 PM, Keren Lasker wrote: > >> hi, >> Trying to implement misc.TransformationModifier that inherits from >> core.SingletonModifier >> >> #include "misc_exports.h" >> #include "internal/misc_version_info.h" >> ... >> #include "IMP/core/SingletonModifier.h" >> >> >> IMPMISC_BEGIN_NAMESPACE >> >> class IMPMISCEXPORT TransformationModifier : public SingletonModifier >> >> The compiler can not recognize SingletonModifier, specifically I get: >> g++ -pthread -o modules/misc/pyext/misc_wrap.os -c -g -fPIC -fno- >> strict-aliasing -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -- >> param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC - >> Ibuild/include -I/usr/include/python2.5 modules/misc/pyext/ >> misc_wrap.cc >> In file included from build/include/IMP/misc.h:22, >> from modules/misc/pyext/misc_wrap.cc:3236: >> >> >> should I change something in the SConsript file of mics/include? >> >> thank you, >> Keren. >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev
Might as well check in the new one as the build is all broken anyway. The C++ stuff will build, only one of the misc tests will fail (and perhaps not even that if you don't depend on being able to cast if from TranformationModifier to SingletonModifier).
On Nov 29, 2008, at 4:41 PM, Keren Lasker wrote:
> ok. > I think I'll just check in the transformation class with the old > TransformationFunction and once it will be sort out I'll switch to > TrasnformationModifier. > > On Nov 30, 2008, at 2:41 AM, Daniel Russel wrote: > >> It is in the core namespace. So on the C++ side you need "public >> IMP::core::SingletonModifier". The python side doesn't work yet. I >> asked Ben if he knows how to fix it, but haven't gotten a response. >> >> On Nov 29, 2008, at 4:31 PM, Keren Lasker wrote: >> >>> hi, >>> Trying to implement misc.TransformationModifier that inherits from >>> core.SingletonModifier >>> >>> #include "misc_exports.h" >>> #include "internal/misc_version_info.h" >>> ... >>> #include "IMP/core/SingletonModifier.h" >>> >>> >>> IMPMISC_BEGIN_NAMESPACE >>> >>> class IMPMISCEXPORT TransformationModifier : public >>> SingletonModifier >>> >>> The compiler can not recognize SingletonModifier, specifically I >>> get: >>> g++ -pthread -o modules/misc/pyext/misc_wrap.os -c -g -fPIC -fno- >>> strict-aliasing -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -- >>> param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC - >>> Ibuild/include -I/usr/include/python2.5 modules/misc/pyext/ >>> misc_wrap.cc >>> In file included from build/include/IMP/misc.h:22, >>> from modules/misc/pyext/misc_wrap.cc:3236: >>> >>> >>> should I change something in the SConsript file of mics/include? >>> >>> thank you, >>> Keren. >>> _______________________________________________ >>> IMP-dev mailing list >>> IMP-dev@salilab.org >>> https://salilab.org/mailman/listinfo/imp-dev >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev
Daniel - I prefer to wait with TransformationModifier till I can make the test_particles_transformation.py pass. In the meantime I added the new Rotation stiff (r903) On Nov 30, 2008, at 3:01 AM, Daniel Russel wrote:
> Might as well check in the new one as the build is all broken anyway. > The C++ stuff will build, only one of the misc tests will fail (and > perhaps not even that if you don't depend on being able to cast if > from TranformationModifier to SingletonModifier). > > On Nov 29, 2008, at 4:41 PM, Keren Lasker wrote: > >> ok. >> I think I'll just check in the transformation class with the old >> TransformationFunction and once it will be sort out I'll switch to >> TrasnformationModifier. >> >> On Nov 30, 2008, at 2:41 AM, Daniel Russel wrote: >> >>> It is in the core namespace. So on the C++ side you need "public >>> IMP::core::SingletonModifier". The python side doesn't work yet. I >>> asked Ben if he knows how to fix it, but haven't gotten a response. >>> >>> On Nov 29, 2008, at 4:31 PM, Keren Lasker wrote: >>> >>>> hi, >>>> Trying to implement misc.TransformationModifier that inherits from >>>> core.SingletonModifier >>>> >>>> #include "misc_exports.h" >>>> #include "internal/misc_version_info.h" >>>> ... >>>> #include "IMP/core/SingletonModifier.h" >>>> >>>> >>>> IMPMISC_BEGIN_NAMESPACE >>>> >>>> class IMPMISCEXPORT TransformationModifier : public >>>> SingletonModifier >>>> >>>> The compiler can not recognize SingletonModifier, specifically I >>>> get: >>>> g++ -pthread -o modules/misc/pyext/misc_wrap.os -c -g -fPIC -fno- >>>> strict-aliasing -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions >>>> -- >>>> param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC - >>>> Ibuild/include -I/usr/include/python2.5 modules/misc/pyext/ >>>> misc_wrap.cc >>>> In file included from build/include/IMP/misc.h:22, >>>> from modules/misc/pyext/misc_wrap.cc:3236: >>>> >>>> >>>> should I change something in the SConsript file of mics/include? >>>> >>>> thank you, >>>> Keren. >>>> _______________________________________________ >>>> IMP-dev mailing list >>>> IMP-dev@salilab.org >>>> https://salilab.org/mailman/listinfo/imp-dev >>> >>> _______________________________________________ >>> IMP-dev mailing list >>> IMP-dev@salilab.org >>> https://salilab.org/mailman/listinfo/imp-dev >> >> _______________________________________________ >> IMP-dev mailing list >> IMP-dev@salilab.org >> https://salilab.org/mailman/listinfo/imp-dev > > _______________________________________________ > IMP-dev mailing list > IMP-dev@salilab.org > https://salilab.org/mailman/listinfo/imp-dev
participants (2)
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Daniel Russel -
Keren Lasker