HI, Does anyone know how I could model an alanine dipeptide in IMP? My problem is capping,  I am not a big expert on dialanine but it seems common to cap the N- and C- terminals using ACE for the N-terminal and CT3 patch on the C-terminal (removing
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HI,

Does anyone know how I could model an alanine dipeptide in IMP? My problem is capping, 

I am not a big expert on dialanine but it seems common to cap the N- and C- terminals using ACE for the N-terminal and CT3 patch on the C-terminal (removing the OXT). Is that possible in IMP?

Best,
Barak