On Tue, Dec 03, 2013 at 12:20:01PM -0800, Daniel Russel wrote: > You should be able to use the IMP_DATA environment variable to change the > search path. Define it to be /c5/shared/imp/2.1.1-1.el5. > centos.x86_64/share/IMP. > That was it :D
I also have to export IMP_EXAMPLE_DATA to /c5/shared/imp/2.1.1-1.el5.centos.x86_64/share/doc/IMP-2.1.1/examples
Now http://www.salilab.org/~drussel/unstructured/imp_doc/atom_examples.html works :D
[tru@sillage imp]$ python dope.py creating representation creating DOPE score function Failed to find type for #373 "OXT" (O) #54 "ASP" Reading 158 by 158 from file /c5/shared/imp/2.1.1-1.el5.centos.x86_64/share/IMP/score_functor/dope_score.lib PMF table entries have 30 bins with width 0.5 DOPE SCORE ::WARNING Method double IMP::kernel::Model::evaluate(bool, bool) is deprecated. WARNING: Use a scoring function or Model::update() instead. begin Model 0::update: begin Model 0::do_set_has_required_score_states: begin Model 0::do_set_has_required_score_states: begin get_update_order: <...> end Model Restraints scoring::evaluate end Model Restraints::evaluate -4045.79361447 begin Model 0::do_destroy: Destroying model end Model 0::do_destroy
> Let me know if that works or not.
Thanks a lot, now we can let the users choose which IMP versions they want!
Best regards,
Tru