Dear all,
I have problems compiling the develop-version of IMP, while the master is fine. Running: "cmake ../imp -DCMAKE_BUILD_TYPE=Debug -DIMP_DISABLED_MODULES=cgal:membrane -DIMP_PER_CPP_COMPILATION=core" works, but "make -j 8" crashes after about 20% with the following message: " Scanning dependencies of target imp_benchmark /bin/sh: 1: Syntax error: Bad fd number make[2]: *** [doxygen/base/tags] Error 2 make[1]: *** [modules/base/CMakeFiles/IMP.base-doc.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... "
A similar error occurs when calling "git imp update": Fetching changes from origin tools/git/gitflow/git-imp: 125: tools/git/gitflow/git-imp: Syntax error: Bad fd number
I found, that "Bad fd number" is often related to the shell used in the makefiles. For our system sh points to dash, not bash. Might that be the reason why I run into problems? Which shell are you using? When I change in tools/git/gitflow/git-imp "#!/bin/sh" to "#!/bin/bash" git imp update works again. Is there a way, that I don't have to search and replace every single "#! bin/sh"? Or do you have any other ideas or hints, what I could try? Could doxygen cause part of the problem?
Thank you very much in advance!
Pia
Pia Unverdorben (Dipl. Math.) Max-Planck Institut für Biochemie Am Klopferspitz 18 D-82152 Martinsried
unverdor@biochem.mpg.de