try to use your experimental profile in the SAXSRestraint test, modules/pmi/test/test_saxs_restraint.py instead of "multi_A.pdb.dat" and see if you get the same error message from the test.

you can also try foxs (with any protein and this profile) to see if your profile file format is ok.

On Wed, Nov 30, 2016 at 3:38 PM, Josh Bullock <jma.bullock@gmail.com> wrote:

okay thanks for the advice.

Just trying to get SAXSRestraint working now ...

I get the following error:
Profile is not sampled for q = 0.0054794, q_max = 0.5
You can remove points with q > 0.5 from the experimental profile or recompute the profile with higher max_q

I'm slightly confused as 0.0054795 < 0.5, and also there are no values in my .dat file above 0.5. Finally, there doesn't seem to be a way to alter the max_q through the pmi module, would i have to go through the C++ ?

Thanks,

josh

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