Ben is right. Each line is a symmetry group (list of proteins that should be considered equivalent for RMSD calculation). It should work for general cases. Let us know there's a problem.
Best Shruthi
On Fri, Feb 26, 2021 at 12:54 AM Jan Kosinski jan.kosinski@embl.de wrote:
> Hi Ben and all, > > This actually just works for me, thanks for quick response! > > And thanks Shruthi ! > > Best, > Jan > > > On 25. Feb 2021, at 19:44, Ben Webb ben@salilab.org wrote: > > > > On 2/25/21 6:40 AM, Jan Kosinski wrote: > >> What is the specification of the symmetry groups file for imp_sampcon > >> --ambiguity option? > > > > Looks like each line is just a list of equivalent subunits: > > > https://github.com/salilab/imp-sampcon/blob/main/test/symminput/symm_groups.... > > > > Shruthi (who wrote this code) or Rakesh (who's used it recently IIRC) > may have more information. > > > > Ben > > -- > > ben@salilab.org https://salilab.org/~ben/ > > "It is a capital mistake to theorize before one has data." > > - Sir Arthur Conan Doyle > > _______________________________________________ > > IMP-users mailing list > > IMP-users@salilab.org > > https://salilab.org/mailman/listinfo/imp-users > >