22 May
2018
22 May
'18
2:08 p.m.
On 05/22/2018 07:57 AM, Julian wrote: > I was wondering if the resolution parameter in > IMP.pmi.restraints.stereochemistry.ExcludedVolumeSphere should depend on > the scale of the model. In most scripts I've seen on github, the > resolution is set to 10. But I was thinking if Beadsize is 50 or 100, > maybe it would make more sense to increase this parameter?
The absolute value of the resolution is a bit misleading - it should really be thought of as more of an enumeration where resolution=0 corresponds to atomic resolution, resolution=1 to 1 residue per bead, and resolution=10 to >1 residue per bead. It shouldn't be necessary to change resolution when beadsize is changed.
Ben
--
ben@salilab.org https://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle