I haven't seen that error before.
What platform are you building on? eg linux or mac, what distribution/os version, swig version?
On Jan 20, 2011, at 3:30 AM, Robert Fenwick wrote:
> > By modifying the config.py file to include a long list of include directories imp fails to build: > > Install file: "kernel/include/constants.h" as "build/include/IMP/constants.h" > g++ -o build/src/kernel_wrap.os -c -Wno-deprecated -Woverloaded-virtual -fPIC -DIMP_SWIG_WRAPPER -Ibuild/include -I/home/fenwick/opt/include -I/home/fenwick/opt/include/boost -I/home/fenwick/opt/include/CGAL -I/home/fenwick/opt/include/Python2.5 -I/home/fenwick/opt/include/python2.5 build/src/kernel_wrap.cpp > build/src/kernel_wrap.cpp: In function 'int SWIG_CanCastAsInteger(double*, double, double)': > build/src/kernel_wrap.cpp:3728: error: 'DBL_EPSILON' was not declared in this scope > scons: *** [build/src/kernel_wrap.os] Error 1 > scons: building terminated because of errors. > > > On 20 Jan 2011, at 12:18, Robert Fenwick wrote: > >> >> Hi, >> >> I have installed IMP with the minimal requirements that I think that it needs and everything seems to compile without problems. However when I try to import the python modules I get some nasty import errors. >> >> Any help greatly appreciated. >> >> >>> import IMP.core >> >>> import IMP.atom >> Traceback (most recent call last): >> File "<stdin>", line 1, in <module> >> File "/home/fenwick/opt/lib64/python2.5/site-packages/IMP/atom/__init__.py", line 28, in <module> >> import _IMP_atom >> ImportError: /home/fenwick/opt/lib64/python2.5/site-packages/_IMP_atom.so: undefined symbol: _ZN3IMP4atom14CHARMMTopology32CHARMMSegmentTopologyDataWrapperD1Ev >> >>> import IMP.saxs >> Traceback (most recent call last): >> File "<stdin>", line 1, in <module> >> File "/home/fenwick/opt/lib64/python2.5/site-packages/IMP/saxs/__init__.py", line 163, in <module> >> import IMP.atom >> File "/home/fenwick/opt/lib64/python2.5/site-packages/IMP/atom/__init__.py", line 28, in <module> >> import _IMP_atom >> ImportError: /home/fenwick/opt/lib64/python2.5/site-packages/_IMP_atom.so: undefined symbol: _ZN3IMP4atom14CHARMMTopology32CHARMMSegmentTopologyDataWrapperD1Ev >> >> >> Here is the end of teh build process that appears to have worked. >> >> scons: done building targets. >> >> >> Enabled dependencies: Boost.FileSystem, Boost.ProgramOptions >> Disabled dependencies: OpenMM, Bullet, CGAL, ANN, OpenCV, NetCDF, modeller, FFTW3, GSL >> >> Enabled modules: em, kernel, domino, misc, statistics, container, display, saxs, system, core, algebra, restrainer, benchmark, atom, example >> Disabled modules: openmm, cgal, bullet, multifit, gsl, modeller, em2d >> >> Enabled applications: foxs, ligand_score, saxs_tools, em_tools >> >> Enabled systems: Groel, example_system >> >> >> R. Bryn Fenwick >> robert.fenwick@irbbarcelona.org >> Post-doctoral fellow >> Chemistry and Molecular Pharmacology Programme >> Institute for Research in Biomedicine (IRB Barcelona) >> Parc Científic de Barcelona >> Baldiri Reixac 10, 08028 Barcelona, SPAIN >> Tel. (+34) 9340 20460 >> >> >> > > R. Bryn Fenwick > robert.fenwick@irbbarcelona.org > Post-doctoral fellow > Chemistry and Molecular Pharmacology Programme > Institute for Research in Biomedicine (IRB Barcelona) > Parc Científic de Barcelona > Baldiri Reixac 10, 08028 Barcelona, SPAIN > Tel. (+34) 9340 20460 > > > > _______________________________________________ > IMP-users mailing list > IMP-users@salilab.org > https://salilab.org/mailman/listinfo/imp-users