Hello,


I'm trying to set up PMI GaussianEMRestraints with proteins consisting of flexible beads and rigid bodies. I followed the approach of the RNA Pol tutorial, so I used IMP.pmi.tools.get_densities and pass it on to IMP.pmi.restraints.em.GaussianEMRestraint. The GMM was created from a map via create_gmm.py​.


However, it seems that only the flexible beads are being restrained and the rigid bodies are not fitted to the GMM. 

Any idea why this is happening? I also have a simpler test case prepared if necessary.


Best,

Swantje



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Swantje Lenz
M. Sc. Biotechnology
Fachgebiet Bioanalytik (TIB 4/4-3), Institut für Biotechnologie, Technische Universität Berlin
Technische Universität Berlin | Gustav-Meyer-Allee 25 | Gebäude 17a | 13355 Berlin
Tel +49 30 314-72906 | web:
http://www.bioanalytik.tu-berlin.de/