24 Sep
2021
24 Sep
'21
8:37 a.m.
Hello,
I have seen in some manuscripts (e.g. the cop9 signalosome paper by Gutierrez et al. https://www.pnas.org/content/117/8/4088 ) the analysis of average contact maps from clusters coming out of imp-sampcon or similar analysis of PMI modeling runs. In that manuscript for example it's in Fig. S7, panel G. I was wondering if you could tell me what is the tool used for this type of analysis, and whether it works on pdb or rmf files? How does it handle beads? I have used similar tools in the past, but those function only with PDB files, and for the system I am currently working with I am especially interested in contacts between coarse grained regions...
Many thanks in advance,
Andrea