I'll take a look. Thanks.
On Mon, Jul 1, 2013 at 2:44 AM, Pia Unverdorben unverdor@biochem.mpg.dewrote:
> Dear all, > > after some time, I updated IMP. Now the way I set up > ConnectivityRestraints fails. I combine several particles to a > pseudo-particle and the connectivity restraint gets a list of this > pseudo-particles. The problem occurs in the moment, I try to evaluate the > restraint. > Attached is an example script, based on the connectivity example. That > works still fine in an older IMP version, but now it gives me an error > message "_IMP_base.InternalException: Not in input list. Violating object: > "Model 0". Attribute x of particle "P3" with id 3" even though P3 has a > x-value. > What is wrong in my approach? Or what did change in the implementation? > Is it related to the issue, that in my case particle.show() now only > displays the name, but no attributes anymore? > Furthermore, there is a "WARNING You should pass the model to the > Restraint constructor. Constructing ConnectivityRestraint %1%", directly > when I call IMP.core.ConnectivityRetraint. Is there a possibility to add > the Model already at this point, which is not described in the > documentation? I use set_model in the next line... > > Thanks in advance! > > Pia > > > > > Pia Unverdorben (Dipl. Math.) > Max-Planck Institut für Biochemie > Am Klopferspitz 18 > D-82152 Martinsried > > unverdor@biochem.mpg.de > > > _______________________________________________ > IMP-users mailing list > IMP-users@salilab.org > https://salilab.org/mailman/listinfo/imp-users > >