Hello all,
I tried to build IMP on an ubuntu 12.04 by going over the directions in your site. These are the directions I used :
*Building IMP from source is straightforward if the prerequisiteshttp://www.integrativemodeling.org/2.0.1/doc/html/installation.html#prereqare already installed. We recommend you get IMP from git by git clone git://github.com/salilab/imp.git To build, create a directory to build IMP in (it is good practice not to build in the source directory and do) * * *
*cmake ../imp -DCMAKE_BUILD_TYPE=Release make -j 4*
The only change I did was to disable Doxygen. I did the git clone about 12 hours ago.
The build runs OK until it fails on one of the swig creation phases :
[ 70%] Built target _IMP_symmetry [ 70%] Built target imp_symmetry_python [ 71%] Built target _IMP_atom [ 72%] Built target imp_atom_python [ 72%] Built target _IMP_scratch [ 73%] Built target imp_scratch_python [ 73%] Built target _IMP_em [ 73%] Built target imp_em_python [ 73%] Built target _IMP_kinematics [ 74%] Built target imp_kinematics_python [ 75%] Built target _IMP_misc [ 75%] Built target imp_misc_python [ 75%] Running swig on rmf Traceback (most recent call last): File "/home/bojemoi/university/imp-source/tools/build/make_swig_wrapper.py", line 94, in <module> main() File "/home/bojemoi/university/imp-source/tools/build/make_swig_wrapper.py", line 87, in main run_swig(outputdir, options) File "/home/bojemoi/university/imp-source/tools/build/make_swig_wrapper.py", line 44, in run_swig ret = tools.run_subprocess(args, cwd=outputdir) File "/home/bojemoi/university/imp-source/tools/build/tools.py", line 465, in run_subprocess % (ret, " ".join(command))) OSError: subprocess failed with return code 1: swig -castmode -interface _IMP_rmf -DPySwigIterator=IMP_RMF_PySwigIterator -DSwigPyIterator=IMP_RMF_SwigPyIterator -python -c++ -naturalvar -fvirtual -Wextra -I../../include -I../../swig -oh wrap.h-in -o wrap.cpp-in -I/home/bojemoi/university/imp-release/include -I/usr/include /home/bojemoi/university/imp-release/swig/IMP_rmf.i make[2]: *** [src/rmf_swig/wrap.cpp] Error 1 make[1]: *** [modules/rmf/pyext/CMakeFiles/_IMP_rmf.dir/all] Error 2 make: *** [all] Error 2
When trying to execute the same command myself (the swig command that fails with error code 1) I get :
bojemoi@linux:~/university/imp-release$ swig -castmode -interface _IMP_rmf -DPySwigIterator=IMP_RMF_PySwigIterator -DSwigPyIterator=IMP_RMF_SwigPyIterator -python -c++ -naturalvar -fvirtual -Wextra -I../../include -I../../swig -oh wrap.h-in -o wrap.cpp-in -I/home/bojemoi/university/imp-release/include -I/usr/include /home/bojemoi/university/imp-release/swig/IMP_rmf.i
/home/bojemoi/university/imp-release/swig/IMP_rmf.impl.i:1: Error: Unable to find 'RMF.i'
Many other modules that do not relate to RMF.i build correctly and I can import them from python , but I happen to need multfit that DOES require RMF...
I tried to search for RMF.i in my release directory :
bojemoi@linux:~/university/imp-release$ find | grep RMF ./include/IMP/rmf/RMFWriter.h ./data/build_info/RMF
bojemoi@linux:~/university/imp-release$ cat data/build_info/RMF ok=True includepath="" swigpath="" libpath=""
Swig version is 2.0.4 by the way.
Thank you! Dany