Hi, Daniel,

Many Thanks.

We would like to input a network, which means a set of binary proteins with interaction, and hope IMP could produce a graph of the network. Also, we want to represent some biological restraints on the protein-protein interaction we generalized in IMP, reduce some interactions and optimize the network. 

So, could you give me some more advice?

Thank,again,
Hongzhu

--
Hongzhu Cui, PhD Student

University of Missouri
Informatics Institute
246 Engineering Building West
Columbia, MO 65211
phone: +1(573)239-1592
e-mail: cuihzh@gmail.com;
hcxk9@mail.missouri.edu


2013/11/1 Daniel Russel <drussel@gmail.com>
Can you provide a bit more information about what you want to do with the network? Are you looking to find a structure? Or produce a graph of the network at the end?

The connectivity restraints may be something you want to look at core::ConnectivityRestraint and core::MSConnectivityRestraint and atom::create_connectivity_restraint().


On Thu, Oct 31, 2013 at 10:13 PM, Hongzhu Cui <cuihzh@gmail.com> wrote:

Hi, all, 

Recently, I have a project with IMP. Basically, we need to represent a protein-protein interaction network in IMP, and then we add some restraints to see how we could optimize this network. But I stuck on this problem, and I did not find any similar example in the Manual documentation.

Thanks & Regards,
Hongzhu

_______________________________________________
IMP-users mailing list
IMP-users@salilab.org
https://salilab.org/mailman/listinfo/imp-users



_______________________________________________
IMP-users mailing list
IMP-users@salilab.org
https://salilab.org/mailman/listinfo/imp-users