Hello,
I am wondering how to extract localisation probability densities from a list of RMF files and density ranges? The "actin tutorial" code results in densities that are not in the same reference frame as the models, making it impossible to add the LPDs of the selected cluster to an ihm model, or to view them on top of the rmfs.
Is there an example for this?
Many thanks,
Andrea
On 1/9/20 12:07 PM, Andrea Graziadei wrote: > I am wondering how to extract localisation probability densities from a > list of RMF files and density ranges? The "actin tutorial" code results > in densities that are not in the same reference frame as the models, > making it impossible to add the LPDs of the selected cluster to an ihm > model, or to view them on top of the rmfs.
The actin tutorial uses an older version of the protocol at https://github.com/salilab/imp-sampcon, so you can just use the latest version of that protocol, which includes a fix for the reference frame issue you've noted (https://github.com/salilab/imp-sampcon/issues/2).
We will also update the actin tutorial to use this fixed code (https://github.com/salilab/actin_tutorial/issues/2).
Ben
participants (2)
-
Andrea Graziadei -
Ben Webb