Hi imp users,
Yesterday I had 2 running imp's in 2 computers: 2.0.1 version and the developer version downloaded from github. I deleted both (imp folder and path lines from bash) to get the 2.1.1 version because I am still using IMP.restrainer and I need rmf module to make a movie.
I get this error over and over again in both computers:
[ 88%] /home/bioinfo/Programs/imp/swig/IMP_rmf.impl.i:1: Error: Unable to find 'RMF.i' Running swig on restrainer Traceback (most recent call last): File "/home/bioinfo/Programs/imp-2.0.1/tools/build/make_swig_wrapper.py", line 97, in <module> main() File "/home/bioinfo/Programs/imp-2.0.1/tools/build/make_swig_wrapper.py", line 90, in main run_swig(outputdir, options) File "/home/bioinfo/Programs/imp-2.0.1/tools/build/make_swig_wrapper.py", line 47, in run_swig % (ret, " ".join(args))) OSError: subprocess failed with return code 1: swig -castmode -interface _IMP_rmf -DPySwigIterator=IMP_RMF_PySwigIterator -DSwigPyIterator=IMP_RMF_SwigPyIterator -python -c++ -naturalvar -fvirtual -Wextra -I../../include -I../../swig -oh wrap.h-in -o wrap.cpp-in -I/home/bioinfo/Programs/imp/include -I/usr/include /home/bioinfo/Programs/imp/swig/IMP_rmf.i make[2]: *** [src/rmf_swig/wrap.cpp] Error 1 make[1]: *** [modules/rmf/pyext/CMakeFiles/_IMP_rmf.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... Linking CXX shared library ../../../lib/libimp_domino.so Scanning dependencies of target _IMP_restrainer [ 88%] Built target imp_domino [ 89%] Building CXX object modules/restrainer/pyext/CMakeFiles/_IMP_restrainer.dir/__/__/__/src/restrainer_swig/wrap.cpp.o Linking CXX shared module ../../../lib/_IMP_restrainer.so [ 89%] Built target _IMP_restrainer ^Cmake[2]: *** [modules/core/pyext/CMakeFiles/_IMP_core.dir/__/__/__/src/core_swig/wrap.cpp.o] Interrupt make[1]: *** [modules/core/pyext/CMakeFiles/_IMP_core.dir/all] Interrupt make[2]: *** [modules/atom/pyext/CMakeFiles/_IMP_atom.dir/__/__/__/src/atom_swig/wrap.cpp.o] Interrupt make[1]: *** [modules/atom/pyext/CMakeFiles/_IMP_atom.dir/all] Interrupt
I searched for the RMF.i file it is ok located in rmf/dependency/RMF/swig/RMF.i
I tried with all versions (even getting the RMF_source from git to get the module), I tried to turn off the network as Jan suggested here ,I tried the developer version also, installed the doxygen 1.8.5 version also and the same error always. I don't know what I am missing because yesterday I installed the 2.1.1 and the developer version in one of the computers without problems, and today does not work.
I would really appreciate your help,
thanks a lot
Ibai Irastorza Azkarate, PhD Student Centro Andaluz de Biología del Desarrollo CABD Universidad Pablo de Olavide, Carretera de Utrera km1, 41013 Sevilla, Spain http://www.cabd.es/en-research_groups-104-247-microbiology-s-platypus-summar...
On 4/3/14, 11:59 AM, Ibai Irastorza wrote: > Yesterday I had 2 running imp's in 2 computers: 2.0.1 version and the > developer version downloaded from github. I deleted both (imp folder and > path lines from bash) to get the 2.1.1 version because I am still using > IMP.restrainer and I need rmf module to make a movie. > > I get this error over and over again in both computers: ... > "/home/bioinfo/Programs/imp-2.0.1/tools/build/make_swig_wrapper.py",
Looks like you have something confused somewhere, if you're trying to build IMP 2.1.1 in the imp-2.0.1 directory. RMF.i is in different places in the two versions.
> I tried to turn off the network as Jan suggested here ,I > tried the developer version also, installed the doxygen 1.8.5 version > also and the same error always.
That particular suggestion was to fix doxygen. The error you've posted above is unrelated.
Ben
I tried to build every version to test if I could install it. I just showed one of the errors, when I was building that particular version. But I did not mix with the version, when I was with a version, I made sure the other ones were deleted.
I know it was a suggestion to fix doxygen, but I only wanted to try every thing before posting here, sorry.
Ibai Irastorza Azkarate, PhD Student Centro Andaluz de Biología del Desarrollo CABD Universidad Pablo de Olavide, Carretera de Utrera km1, 41013 Sevilla, Spain http://www.cabd.es/en-research_groups-104-247-microbiology-s-platypus-summar...
2014-04-03 23:05 GMT+02:00 Ben Webb ben@salilab.org:
> On 4/3/14, 11:59 AM, Ibai Irastorza wrote: > >> Yesterday I had 2 running imp's in 2 computers: 2.0.1 version and the >> developer version downloaded from github. I deleted both (imp folder and >> path lines from bash) to get the 2.1.1 version because I am still using >> IMP.restrainer and I need rmf module to make a movie. >> >> I get this error over and over again in both computers: >> > ... > >> "/home/bioinfo/Programs/imp-2.0.1/tools/build/make_swig_wrapper.py", >> > > Looks like you have something confused somewhere, if you're trying to > build IMP 2.1.1 in the imp-2.0.1 directory. RMF.i is in different places in > the two versions. > > > I tried to turn off the network as Jan suggested here ,I >> tried the developer version also, installed the doxygen 1.8.5 version >> also and the same error always. >> > > That particular suggestion was to fix doxygen. The error you've posted > above is unrelated. > > Ben > -- > ben@salilab.org http://salilab.org/~ben/ > "It is a capital mistake to theorize before one has data." > - Sir Arthur Conan Doyle > _______________________________________________ > IMP-users mailing list > IMP-users@salilab.org > https://salilab.org/mailman/listinfo/imp-users >
Hi!
I fixed the problem deleting all the links and libraries of imp and rmf I found in the system located in /usr/local/bin and lib
cheers!
Ibai Irastorza Azkarate, PhD Student Centro Andaluz de Biología del Desarrollo CABD Universidad Pablo de Olavide, Carretera de Utrera km1, 41013 Sevilla, Spain http://www.cabd.es/en-research_groups-104-247-microbiology-s-platypus-summar...
2014-04-04 0:07 GMT+02:00 Ibai Irastorza iiraazc@upo.es:
> I tried to build every version to test if I could install it. I just > showed one of the errors, when I was building that particular version. But > I did not mix with the version, when I was with a version, I made sure the > other ones were deleted. > > I know it was a suggestion to fix doxygen, but I only wanted to try every > thing before posting here, sorry. > > Ibai Irastorza Azkarate, PhD Student > Centro Andaluz de Biología del Desarrollo CABD > Universidad Pablo de Olavide, > Carretera de Utrera km1, > 41013 Sevilla, Spain > > http://www.cabd.es/en-research_groups-104-247-microbiology-s-platypus-summar... > > > 2014-04-03 23:05 GMT+02:00 Ben Webb ben@salilab.org: > > On 4/3/14, 11:59 AM, Ibai Irastorza wrote: >> >>> Yesterday I had 2 running imp's in 2 computers: 2.0.1 version and the >>> developer version downloaded from github. I deleted both (imp folder and >>> path lines from bash) to get the 2.1.1 version because I am still using >>> IMP.restrainer and I need rmf module to make a movie. >>> >>> I get this error over and over again in both computers: >>> >> ... >> >>> "/home/bioinfo/Programs/imp-2.0.1/tools/build/make_swig_wrapper.py", >>> >> >> Looks like you have something confused somewhere, if you're trying to >> build IMP 2.1.1 in the imp-2.0.1 directory. RMF.i is in different places in >> the two versions. >> >> >> I tried to turn off the network as Jan suggested here ,I >>> tried the developer version also, installed the doxygen 1.8.5 version >>> also and the same error always. >>> >> >> That particular suggestion was to fix doxygen. The error you've posted >> above is unrelated. >> >> Ben >> -- >> ben@salilab.org http://salilab.org/~ben/ >> "It is a capital mistake to theorize before one has data." >> - Sir Arthur Conan Doyle >> _______________________________________________ >> IMP-users mailing list >> IMP-users@salilab.org >> https://salilab.org/mailman/listinfo/imp-users >> > >
participants (2)
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Ben Webb -
Ibai Irastorza