Re: [IMP-users] FW: Installing IMP on Ubuntu
>Does "import IMP.multifit" work from a Python interpreter? It sounds like some of your environment variables aren't set. Did you use the setup_environment script?
"import IMP.multifit" does not work. I did use setup_enviroment script. But not all modules could be found.
>And they are...?
Besides multifit, I also noticed that em2d, emagefit, cnmultifit, numpy, could not be found. (Many other modules and applications work well.)
Alan
Nan (Alan) Zhao, Ph.D. Assistant Research Professor Department of Basic Sciences College of Veterinary Medicine P.O.Box 6100 Mississippi State, MS 39762 Phone: 662-325-1208 Email: nzhao@cvm.msstate.edu
On Fri, Nov 15, 2013 at 3:23 PM, Nan (Alan) Zhao nzhao@cvm.msstate.eduwrote:
> > > -----Original Message----- > From: imp-users-bounces@salilab.org [mailto:imp-users-bounces@salilab.org] > On Behalf Of Ben Webb > Sent: Friday, November 15, 2013 10:14 AM > To: Help and discussion for users of IMP > Subject: Re: [IMP-users] Installing IMP on Ubuntu > > On 11/15/13 6:54 AM, Nan Zhao wrote: > > I am new to IMP and tried to install it on a Ubuntu server. It worked > > well mostly and after building, I am able to use basic applications > > and modules. However, I just noticed that not all modules are > > installed. For example, if I run multifit.py, Error shows "No module > named > multifit". > > Does "import IMP.multifit" work from a Python interpreter? It sounds like > some of your environment variables aren't set. Did you use the > setup_environment script? > > > There are more than just this one. > > And they are...? > > > /usr/local/src/imp_release/doxygen/generated/all.dox:9: warning: > > unable to resolve reference to `impcgal' for \ref command > > This is just related to the documentation - nothing to worry about. > > BEn > -- > ben@salilab.org http://salilab.org/~ben/ > "It is a capital mistake to theorize before one has data." > - Sir Arthur Conan Doyle > _______________________________________________ > IMP-users mailing list > IMP-users@salilab.org > https://salilab.org/mailman/listinfo/imp-users > >
On 11/15/13 1:36 PM, Nan Zhao wrote: > "import IMP.multifit" does not work. I did use setup_enviroment script. > But not all modules could be found.
Well, that would suggest that those modules weren't built, because the necessary dependencies weren't found.
> >And they are...? > Besides multifit, I also noticed that em2d, emagefit, cnmultifit, numpy, > could not be found. (Many other modules and applications work well.)
numpy isn't an IMP module. The other modules you list need OpenCV, FFTW, and/or libTAU, which you probably don't have on your system. If you need those modules and/or applications, you'll need to install the dependencies and rebuild IMP.
Ben
participants (2)
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Ben Webb -
Nan Zhao