Do classes inheriting from automodel get propagated when using the sge_qsub parallel job? I can get a parallel run to work with automodel, but not with a new class including a cis-peptide restraint defined in special_restraints (which I can get to run in single proc mode).
<br><br>I get the following error:<br><br># Traceback (most recent call last):<br>&nbsp; File &quot;psamdc.py&quot;, line 77, in ?<br>&nbsp;&nbsp;&nbsp; a.make()<br>&nbsp; File &quot;/home/namd/lib/modeller9v2/modlib/modeller/automodel/automodel.py&quot;, line 110, in make
<br>&nbsp;&nbsp;&nbsp; self.multiple_models(atmsel)<br>&nbsp; File &quot;/home/namd/lib/modeller9v2/modlib/modeller/automodel/automodel.py&quot;, line 214, in multiple_models<br>&nbsp;&nbsp;&nbsp; self.parallel_multiple_models(atmsel)<br>&nbsp; File &quot;/home/namd/lib/modeller9v2/modlib/modeller/automodel/automodel.py&quot;, line 234, in parallel_multiple_models
<br>&nbsp;&nbsp;&nbsp; self.outputs.extend(job.run_all_tasks())<br>&nbsp; File &quot;/home/namd/lib/modeller9v2/modlib/modeller/parallel/job.py&quot;, line 110, in run_all_tasks<br>&nbsp;&nbsp;&nbsp; self.finish_next_task()<br>&nbsp; File &quot;/home/namd/lib/modeller9v2/modlib/modeller/parallel/job.py&quot;, line 127, in finish_next_task
<br>&nbsp;&nbsp;&nbsp; self.process_event(obj, s)<br>&nbsp; File &quot;/home/namd/lib/modeller9v2/modlib/modeller/parallel/job.py&quot;, line 141, in process_event<br>&nbsp;&nbsp;&nbsp; task = obj.task_results()<br>&nbsp; File &quot;/home/namd/lib/modeller9v2/modlib/modeller/parallel/slave.py&quot;, line 54, in task_results
<br>&nbsp;&nbsp;&nbsp; r = self.get_data(allow_heartbeat=True)<br>&nbsp; File &quot;/home/namd/lib/modeller9v2/modlib/modeller/parallel/communicator.py&quot;, line 78, in get_data<br>&nbsp;&nbsp;&nbsp; (cmdtype, obj) = self._recv()<br>&nbsp; File &quot;/home/namd/lib/modeller9v2/modlib/modeller/parallel/communicator.py&quot;, line 116, in _recv
<br>&nbsp;&nbsp;&nbsp; raise RemoteError(obj, self)<br>modeller.parallel.communicator.RemoteError: AttributeError: &#39;module&#39; object has no attribute &#39;cismodel&#39; from &lt;SGE qsub slave, ID 107.1&gt;<br><br>Is there a convenient way around this?
<br><br>Thanks in advance<br><br>Regards<br clear="all"><br>-- <br>I think perhaps the most important problem is that we are trying to understand the&nbsp;&nbsp;fundamental workings of the universe via a language devised for telling one another when the best fruit is.
<br><br>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;-- Terry Pratchett, alt.fan.pratchett<br>--<br><br>Gordon Wells<br>Bioinformatics and Computational Biology Unit<br>Department of Biochemistry<br>University of Pretoria