Hi,
You are right. There is a problem with CHAIN files in MODELLER 6v0 and 6v1. I am working on it and I will send another message when the problem is solved.
Thanks, Bozidar
-----Original Message----- From: owner-modeller_usage@salilab.org [mailto:owner-modeller_usage@salilab.org] On Behalf Of vuissoz Jean-Marc Sent: Saturday, February 16, 2002 10:48 AM To: modeller_usage@salilab.org Subject: bug report
dear modeller team, Probably something is not installed correctly on my version of modeller6.1 but I don't find what, here are the log files en top files with the error reported. best tanks
vuissoz jean-marc >P1;1fdx sequence:1fdx:1 : :54 : :ferredoxin:Peptococcus aerogenes: >2.00:-1.00 AYVINDSCIACGECPVNIIQGSIYAIDADSCIDCGSCASVCPVGAPNPED*
SET SEARCH_RANDOMIZATIONS = 100 SET FILE = 'prot.ali' SEQUENCE_SEARCH ALIGN_CODES = '1fdx', DATA_FILE = ON
MODELLER 6v1, 17 Jan 2002
PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
Copyright(c) 1989-2002 Andrej Sali
All Rights Reserved
Written by A. Sali
with help from A. Fiser, R. Sanchez, M.A. Marti-Renom,
B. Jerkovic, A. Badretdinov, F. Melo, J.P. Overington & E. Feyfant Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK
Kind, OS, HostName, Kernel, Processor: 4, IRIX64 IRIS 6.5 IP30 Date and time of compilation : 01/25/2002 20:36:35 Job starting time (YY/MM/DD HH:MM:SS): 2002/02/15 17:44:24.629
read_se_367E> Sequence not found; code: P1;1xnb recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Dynamically allocated memory at finish [B,kB,MB]: 2306323 2252.269 2.199 Starting time : 2002/02/15 17:44:24.629 Closing time : 2002/02/15 17:44:33.146 Total CPU time [seconds] : 0.00