Thomas K. Weldeghiorghis wrote: > I am new to modeller and I have trouble creating a homology model of a > protein using two templates. I modified the model-default.py script as > shown below and I got error messages. I would appreciate it if any one > can give me any suggestion.
> a = automodel(env, > alnfile = 'alignment1.ali', # alignment filename > knowns = '2MDbis 1wu9', # codes of the templates > sequence = 'flq15691') # code of the target
'knowns' is an ordinary Python list, so should be: knowns = ('2MDbis', '1wu9')
See the multiple template example in the advanced tutorial for more information: http://salilab.org/modeller/tutorial/advanced.html
Ben Webb, Modeller Caretaker