Re: [modeller_usage] qsub and cis restraints

Gordon Wells wrote: > Do classes inheriting from automodel get propagated when using the > sge_qsub parallel job? I can get a parallel run to work with automodel, > but not with a new class including a cis-peptide restraint defined in > special_restraints (which I can get to run in single proc mode).

My guess is that you've declared this subclass directly in your script, rather than in a separate module. The parallel job support uses the Python 'pickle' module to serialize objects, and that doesn't work for classes declared in the 'main' script. See http://salilab.org/modeller/9v2/manual/node380.html and examples/python/parallel-task.py.

Ben Webb, Modeller Caretaker