Re: [modeller_usage] Distances longer than 8.0 Angstrom?

Amjad Farooq wrote: > Does anyone know why I am getting the error message > "Implied target CA(i)-CA(i+1) distances longer than > 8.0 angstroms:" when running MODELLER and how I can > fix it.

That's not an error message. It's a list of all CA-CA distances longer than 8 Angstroms (such distances usually indicate a problem with your alignment). In your case, it's an empty list. This is normal.

The actual error message you're seeing is:

> csrrng__299E> Atom index is out of bounds: 2393 > 2391

This means that you have a restraint which refers to a non-existent atom. You should check your restraints file and the initial model.

Ben Webb, Modeller Caretaker