On 22/11/06, Dhananjay <dhananjay.c.joshi@gmail.com> wrote:

Hello all,

I am getting followin error while running mod8v2 model-default.py

[dhananjay@cdfd-wstn7 automodel] mod8v2 model-default.py
Traceback (most recent call last):
File "model-default.py ", line 18, in ?
    a.make()                            # do the actual homology modelling
File "/users/dhananjay/bin/modeller8v2/modlib/modeller/automodel/automodel.py", line 100, in make
    self.homcsr (exit_stage)
File "/users/dhananjay/bin/modeller8v2/modlib/modeller/automodel/automodel.py", line 318, in homcsr
    aln = self.read_alignment()
File "/users/dhananjay/bin/modeller8v2/modlib/modeller/automodel/automodel.py", line 312, in read_alignment
    aln.append(file=self.alnfile, align_codes=self.knowns+[self.sequence])
File "/users/dhananjay/bin/modeller8v2/modlib/modeller/alignment.py", line 36, in append
    return self.__int_append('alignment.append ', io, libs, vars)
File "/users/dhananjay/bin/modeller8v2/modlib/modeller/alignment.py", line 68, in __int_append
    libs=libs.modpt, **vars)
File "/users/dhananjay/bin/modeller8v2/modlib/modeller/util/top.py", line 33, in read_alignment
    return _modeller.read_alignment(aln, io, libs, *args)

_modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES(       1) = 1M1G

I am new to this software. Please tell me whats wrong here

Thanking you in advance

--
Dhananjay C Joshi
Project Assistant
LT & LSB, C D F D
ECIL Road, Nacharam
Hyderabad-500 076, INDIA
Tel : +91-40-27151344
Fax : +91-40-27155610
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