hi! i've just installed modeller9v1 from the source code on a x386 pc... everything went fine, but as i run mod9v1 xxx.py, i get this message:
Traceback (most recent call last): File "<string>", line 1, in ? File "/home/teo/_work/_m-i7/modeller.py", line 3, in ? from modeller.automodel import * # Load the automodel class ImportError: No module named automodel
i'm just using the default script file, with the proper file name:
# Homology modeling by the automodel class from modeller import * # Load standard Modeller classes from modeller.automodel import * # Load the automodel class
log.verbose() # request verbose output env = environ() # create a new MODELLER environment to build this model in
# directories for input atom files env.io.atom_files_directory = './:/home/teo/_work/_m-i7/'
a = automodel(env, alnfile = 'm-i7.ali', # alignment filename knowns = '1f88', # codes of the templates sequence = 'm-i7') # code of the target a.starting_model= 1 # index of the first model a.ending_model = 1 # index of the last model # (determines how many models to calculate) a.make() # do the actual homology modeling
can anybody help me? many thanks matteo