On 10/28/13 12:56 PM, Amjad Farooq wrote: > Can you please clarify this for me: > > 1) I have a multi-chain PDB > 2) I have a protein sequence that only matches against one of the chains > in the PDB > > So, how do I automatically, say using a python script and my protein > sequence as a query, extract the chain ID of the PDB segment to which it > matches? Is a script like that available in MODELLER?
No - you would need to write your own. But it is really elementary Python - I recommend the tutorial on the Python website.
Ben Webb, Modeller Caretaker