Re: [modeller_usage] query about coil region!!

Jacob Glanville wrote: > There is a way to enforce coil formation: manually modify the reference > alignment so that the query is not aligned to the reference in the area > of interest. Why do you want to do this?

Apologies if I wasn't clear, but that's what I meant in my post - if there is no aligned template, you will basically get coil. But it doesn't *enforce* coil formation by any means - it will essentially try to do protein folding on that region, which could potentially give you any secondary structure type (it is simply that coil is the most likely product).

Ben Webb, Modeller Caretaker