Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 9

On 1/21/11 7:34 PM, Ashish Runthala wrote: > I tried your approach. It works. But still it wasn't working out the > way i want it. Is it possible that you can find the "final max > quality" for a model decoy with its native state experimental > structure. salign_iterative does work properly for 2 crystal > structures but how to make it work for both template/Native State& > Model structure.

SALIGN does not care whether your structures are crystal structures or models - the quality score simply reflects the degree of structural similarity, regardless of how those structures were generated.

Ben Webb, Modeller Caretaker