Hi,<br>
<br>
We used to have a script for modeller in the old type way. Now we
translated it to python mode, but the function
automodel.generate_method and automodel.rand_method are not working
properly. The following error occurs:<br>
<br>
when a.generate_method is activated:<br>
<br>
Traceback (most recent call last):<br>
&nbsp; File &quot;mod.py&quot;, line 75, in ?<br>
&nbsp;&nbsp;&nbsp;
a.make()&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
# do the actual homology modelling<br>
&nbsp; File &quot;/usr/local/modeller8v1/modlib/modeller/automodel/loopmodel.py&quot;, line 28, in make<br>
&nbsp;&nbsp;&nbsp; automodel.make(self, exit_stage)<br>
&nbsp; File &quot;/usr/local/modeller8v1/modlib/modeller/automodel/automodel.py&quot;, line 100, in make<br>
&nbsp;&nbsp;&nbsp; self.homcsr(exit_stage)<br>
&nbsp; File &quot;/usr/local/modeller8v1/modlib/modeller/automodel/automodel.py&quot;, line 334, in homcsr<br>
&nbsp;&nbsp;&nbsp; self.generate_method(self, aln)<br>
TypeError: 'str' object is not callable<br>
<br>
<br>
when a.rand_method is activated:<br>
<br>
&nbsp;File &quot;mod.py&quot;, line 75, in ?<br>
&nbsp;&nbsp;&nbsp;
a.make()&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
# do the actual homology modelling<br>
&nbsp; File &quot;/usr/local/modeller8v1/modlib/modeller/automodel/loopmodel.py&quot;, line 28, in make<br>
&nbsp;&nbsp;&nbsp; automodel.make(self, exit_stage)<br>
&nbsp; File &quot;/usr/local/modeller8v1/modlib/modeller/automodel/automodel.py&quot;, line 110, in make<br>
&nbsp;&nbsp;&nbsp; self.multiple_models()<br>
&nbsp; File &quot;/usr/local/modeller8v1/modlib/modeller/automodel/loopmodel.py&quot;, line 32, in multiple_models<br>
&nbsp;&nbsp;&nbsp; automodel.multiple_models(self)<br>
&nbsp; File &quot;/usr/local/modeller8v1/modlib/modeller/automodel/automodel.py&quot;, line 197, in multiple_models<br>
&nbsp;&nbsp;&nbsp; self.single_model(num)<br>
&nbsp; File &quot;/usr/local/modeller8v1/modlib/modeller/automodel/automodel.py&quot;, line 210, in single_model<br>
&nbsp;&nbsp;&nbsp; self.rand_method(self)<br>
TypeError: 'str' object is not callable<br>
<br>
<br>
Also I would like suggestions to the script file that is attached.<br>
<br>
Thanks,<br clear="all"><br>-- <br>Ricardo de Paula Nicoluci<br>PhD Student<br>Medicinal Chemistry Laboratory<br>IFSC - University of Sao Paulo<br>Sao Carlos - SP - Brazil