Hi Ben,
I installed the .deb package 64bit, but for some reason it couldn't set pythonpaths correctly. I could solve the problem by adding to paths to pythonpath as you said, as follows:
export PYTHONPATH='$PYTHONPATH:/usr/lib/modeller9.12/lib/x86_64-intel8'' export PYTHONPATH='$PYTHONPATH:/usr/lib/modeller9.12/modlib/''
And that solved import problems, but a python problem (listed as bug since python 2.6) showed up:
undefined symbol: Py_InitModule4
And this was easily solved by editing line 113 in the /usr/include/python2.7/modsupport.h to
#define Py_InitModule4 Py_InitModule4_64
In Mint, I also installed .deb package, but I did not tested above solution yet, but it will probably work.
Thanks for your help.
Att, Gustavo Lima
On Fri, Oct 18, 2013 at 1:43 PM, Modeller Caretaker < modeller-care@salilab.org> wrote:
> On 10/18/13 7:08 AM, Gustavo Machado Alvares de Lima wrote: > >> Hi, I'm trying to import modeller modules to python in order to create >> custom scripts for my needs. When I used the 32bit version of ubuntu (or >> debian), it works perfectly. When I try to run the same script in a >> 64bit OS, python cant find modeller. >> > > Did you install the .deb package? That should have made suitable symlinks > so that everything works without any need for setting random environment > variables (obviously you need to install the 32-bit .deb on a 32-bit > system, and the 64-bit .deb on a 64-bit system). The .deb files are > produced on an Ubuntu 9.10 system, but the Ubuntu folks do have a tendency > to move the Python paths around between releases. > > > in the /usr/lib/modeller9.12/modlib/**modeller/__init__.py it tries to >> import >> _modeller module, and that one I cant find/add. >> > > If you want to go down this route, you'll have to add the directory that > contains _modeller.so to your Python path as well. Setting LD_LIBRARY_PATH > won't help here, because Python doesn't look in that path. > > > I'm using ubuntu 13.04 64bit, but I have this same problem in some other >> distros, like Mint linux (even 32bit on this one). >> > > Did you install the RPM on your Mint system? > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org http://www.salilab.org/**modeller/http://www.salilab.org/modeller/ > Modeller mail list: http://salilab.org/mailman/**listinfo/modeller_usagehttp://salilab.org/mailman/listinfo/modeller_usage >