Re: [modeller_usage] Build missing residues for multisubunit protein

On 07/29/2013 12:02 PM, Kelly Tran wrote: > The error I receive is: > > --- > File "/Library/modeller-9.10/modlib/modeller/coordinates.py", line > 298, in _indxres > raise KeyError("No such residue: %s" % indx) > KeyError: 'No such residue: 1:B' > --- > > I separate the chains with '/' in my alignment file.

See http://salilab.org/modeller/9.12/manual/node29.html

Modeller numbers residues in the entire protein starting at 1 by default; it doesn't reset the numbering to 1 when it starts a new chain.

Ben Webb, Modeller Caretaker