When I run the automodel or the loopmodel classes, either way I get a target.B99990001.pdb for the
structure of the final model. From the documentation, I understand that in the case of the loopmodel, an
extra pdb file will be produced with refined loops.
My question is:
Should the models in files target.B99990001.pdb be the same whether I use automodel or loopmodel?
(provided I'm using the same optimizations and all, I'm just changing the class name in the python script)


        0     |  Mauricio Carrillo Tripp, PhD
     /         |     Department of Molecular Biology, TPC6
 0            |     The Scripps Research Institute
     \         |     10550 North Torrey Pines Road
        0     |     La Jolla, California 92037
     /         |     trippm@scripps.edu
 0            |  http://www.scripps.edu/~trippm

** Aut tace aut loquere meliora silentio **