When I run the automodel or the loopmodel classes, either way I get a target.B99990001.pdb for the<br>structure of the final model. From the documentation, I understand that in the case of the loopmodel, an<br>extra pdb file will be produced with refined loops. <br>
My question is:<br>Should the models in files target.B99990001.pdb be the same whether I use automodel or loopmodel?<br>(provided I&#39;m using the same optimizations and all, I&#39;m just changing the class name in the python script)<br clear="all">
<br>Thanks!<br><br>-- <br> &nbsp; &nbsp; &nbsp; &nbsp; 0 &nbsp; &nbsp; | &nbsp;Mauricio Carrillo Tripp, PhD<br> &nbsp; &nbsp; &nbsp;/ &nbsp; &nbsp; &nbsp; &nbsp; | &nbsp; &nbsp; Department of Molecular Biology, TPC6<br> &nbsp;0 &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;| &nbsp; &nbsp; The Scripps Research Institute<br> &nbsp; &nbsp; &nbsp;\ &nbsp; &nbsp; &nbsp; &nbsp; | &nbsp; &nbsp; 10550 North Torrey Pines Road<br>
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