Hello:
  I am trying to generate loop models with loop protocol in the latest Modeller verison. It only produced 8 models and stopped, and it said the following:

 File "loop.py", line 41, in <module>
    a.make()
  File "/usr/lib64/python2.7/site-packages/modeller/automodel/loopmodel.py", line 36, in make
    self.build_seq(self.inimodel, 1)
  File "/usr/lib64/python2.7/site-packages/modeller/automodel/loopmodel.py", line 190, in build_seq
    self.parallel_loop_models(atmsel, ini_model, num, sched)
  File "/usr/lib64/python2.7/site-packages/modeller/automodel/loopmodel.py", line 208, in parallel_loop_models
    self.loop.outputs.extend(job.run_all_tasks())
  File "/usr/lib64/python2.7/site-packages/modeller/parallel/job.py", line 131, in run_all_tasks
    for task in self._finish_all_tasks():
  File "/usr/lib64/python2.7/site-packages/modeller/parallel/job.py", line 164, in _finish_all_tasks
    task = self._process_event(obj, s)
  File "/usr/lib64/python2.7/site-packages/modeller/parallel/job.py", line 180, in _process_event
    task = obj.task_results()
  File "/usr/lib64/python2.7/site-packages/modeller/parallel/slave.py", line 61, in task_results
    r = self.get_data(allow_heartbeat=True)
  File "/usr/lib64/python2.7/site-packages/modeller/parallel/communicator.py", line 89, in get_data
    (cmdtype, obj) = self._recv()
  File "/usr/lib64/python2.7/site-packages/modeller/parallel/communicator.py", line 130, in _recv
    raise RemoteError(obj.exc, self)
modeller.parallel.communicator.RemoteError: <type 'ValueError'>: GA341______E> Sequence identity -999.000 out of range - must be between
0 and 100.
Seq. ID is read from the model.seq_id variable, which
is obtained automatically from the REMARK lines of
MODELLER-produced PDB files
 from <Slave on localhost>