31 Dec
2006
31 Dec
'06
1:19 a.m.
drugdesign wrote: > I need to model a homodimer from a homodimer templare. How my > alignment file must look like? I mean I have problems with > aminoacids numbers and chain names. How to solve this problems? I've > attached all input files. Do I need to rename and renumber sequence > or I can complete the task without it?
Your alignment is fine - all you need to do is add the starting and ending residue numbers and chain IDs, i.e. change the existing header:
>P1;mfzd structureX:mfzd:::::undefined:undefined:1.35:0.225
to
>P1;mfzd structureX:mfzd:5:A:126:B:undefined:undefined:1.35:0.225
Ben Webb, Modeller Caretaker
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