Re: [modeller_usage] completing incomplete templates

João Rodrigues wrote: > A reply from a newbie as well :) > > If I understood your question correctly you have more or less this > situation: > > TEMPLATE AAAAAAAAAA----------AAAAAAAAA > SEQUENCE AAAAAAAAAABBBBBBBBBBAAAAAAAAA > > If you use the FASTA sequence of your template with its own structure, > it will build a complete structure with those sections modelled as > loops. You just need to provide MODELLER with the template structure, > it's sequence (with gaps in the missing regions), and the sequence of > the full thing.

Exactly right. There is a worked example in the wiki as well: http://salilab.org/modeller/wiki/Missing%20residues

Ben Webb, Modeller Caretaker