[modeller_usage] Dope Vs PROSA2003

jo hanna

14 Mar 2006 14 Mar '06

11:16 a.m.

If am trying to model loops within my protein model that seem to correspond to regions of high energy in both DOPE and PROSA analysis. why should it be that aftre modelling the loop with a lower DOPE energy shoud actaully increase in the region of loop modelling with reference to the original model and PROSA analysis?

Any advice much appreciated Do people generally prefer DOPE or use PROSA and DOPE to complement each other?

Thanks Jo

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